Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | DLVFRDCLIGLNPLGLPSKLLIALTDARLQVVLPKDVDTTATLDLNKASILLIDDVANIGATASTVNRRQSADMSSQQVSRLAAQGFVSICYISSAKVTVKVTESEEDGEKHVDVDLRDDLLVLETCADSTQTLITLANALKPPTPPSKENKYRT |
1 | 5cywB | 0.09 | 0.08 | 2.92 | 0.68 | SPARKS-K | | -------------MGIQHEFDIIINGIALRLQLHKGDNYGCKLKIIKFRFIIRPDWSEIDEVKGLTYAVKVNKVDDTF------YYVIYEAVIHLTEILIYSDDENEHYYPYISLNMISKKYKVKEENYSSPYIEHPLIPYRDYESM-------- |
2 | 2dc4A | 0.10 | 0.10 | 3.55 | 0.60 | FFAS-3D | | -MEI-EVKFRVNFEGLGAKFFGIEEQEDVYFELPSPKLLRVRKINNTGKSYITYKEILDKRNEEFYELEFEVQDPEGAIELFKRLGFKVQGVVKKRRWIYKLNN------VTFELNRVEKFLDIEVIEEGKKIIWDVARRLGLKEEDVEPKLY-- |
3 | 6cbcB | 0.12 | 0.11 | 3.85 | 0.29 | HHpred | | QITIRNIHIRYEDAGHPFALGITLEEFSAVSTDSDSIQSAHLATLESLAIYWDTDAKLIGPGRE---------H--L--KFFRSSEHQFILKPVSGQAKIEIDKTGSHTVPRYKANLLFDEIGVVLDDQQYRDAL--VDLFH---YFIRHQEYKK |
4 | 4mboA2 | 0.10 | 0.09 | 3.32 | 0.69 | MUSTER | | KTNVRSRIMKLDDERQTETYITQINPEGKEMYFASGLGNLYTIIGSDAEVKILKTNSKNLTDSMDQNYDSPEFEDVTSQYSYTNDG-------SKITIDWKTNSISSTTSYVVLVKIPQSGVLYSTVSD-----INQTYGSKYSYGHTN------ |
5 | 3i2nA | 0.07 | 0.06 | 2.36 | 0.75 | CNFpred | | KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDIS---------------MNKLVATSLEGKFHVFDMRTQGFASVSEKAH--KSTVWQVRHLPRELFLTAGGAGGLHLWKYEYP--------------- |
6 | 6cbcB | 0.13 | 0.12 | 4.05 | 0.74 | HHsearch-2 | | QITIRNIHIRYEDAGHPFALGITLEEFSAVSTDSDSIQSAHLATLESLAIYWDTDAKLIGPGRE---------HL-KFFREIASSEHQFILKPVSGQAKIEIDKTGSHTVPRYKANLLFDEIGVVLDDQQYRDAL--VDLFHYFIRHQEYKKFQ- |
7 | 4mboA2 | 0.09 | 0.08 | 2.97 | 0.77 | Neff-PPAS | | KTNVRSRIMKLDDERQTETYITQINPEGKEMYFASGLGNLYTIIGSNAEVKILKTNSKNLTDSMDQNYDSPEFEDVTSQYSYTNDGSKITIDWKTNSIS-------STTSYVVLVKIPQSGVLYSTVSDINQTYGSKYSYGHTN----------- |
8 | 6cbcB | 0.13 | 0.12 | 4.01 | 0.60 | HHsearch | | QITIRNIHIRYEDAGHPFALGITLEEFSAVSTDSDSIQSAHLATLESLAIYWDTDAKLIGPGRE---------HL----KFFASSEHQFILKPVSGQAKIEIDKTGSHTVPRYKANLLFDEIGVVLDDQQYRDAL--VDLFH---YFIRHQEYK- |
9 | 3w3gA | 0.13 | 0.12 | 4.02 | 0.65 | SP3 | | ALHLRGYVFELREDDFPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRISPLVKFDPHSNFYHFTRPLIKPQCAAYG--KALDLSLNSIFFIGPNQFENLPDIACLNLSANSN----------------AQVLSGTEFSAIPHVKY |
10 | 4mboA2 | 0.07 | 0.06 | 2.63 | 0.56 | PROSPECTOR2 | | NTNVRSRIMKLDDERQTETYITQINPEGKEMYFASGLGNLYTIIGLNAEVKILKTNSKNLTDSMDQNYDSPEFEDVTSQYSYTNDGSKITIDWKTNSI-------SSTTSYVVLVKIPQSGVLYSTVSD-----------INQTYGSKYSYGHTN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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