Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | VKLADSLVKKLKWQNVRGLGVVTVTGQLVAEALAKDKLPEKDDGANKRQKTEAEDTDADADADADEAVKKEEEEEEEAESEVVPTLDLLPSNMASAVRSVAQPLHVGDLRLTDLRRAMQSAGYTAEFRGEGTLVINGAVAVRKTSTGKVEVESVGIADAATMMQHRSTFYEVKRMIYDGL |
1 | 5hamA | 0.07 | 0.07 | 2.76 | 0.80 | SPARKS-K | | YWYTENEITHLLTAQLDEKKF-SVQPAITFRNTALTETAKGEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSD-AEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEA-----AVIPIEMVLVAKYDKDNQIILTFNDSLGNSINYDGQKLPKLIDKTLGNLP |
2 | 3iygG1 | 0.15 | 0.15 | 5.05 | 0.47 | FFAS-3D | | ISRWSSLACNIRVEKIPGEDSCVLRGVMINKDVTHPRSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIELREEDVGTGAGLLEIKKIGDEYFTITECKDPTILLRGASKEILSEVERNLQDAM |
3 | 3h0rE | 0.17 | 0.13 | 4.19 | 0.34 | HHpred | | ------VHEESVFAKPKGYQISQTNGWVELNLPNGVRHIEEDAG-----KNIHEGD----------------KTLVDLNRAGTPLMEIVTEP--DIRTPEEARL-----FLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGGTRVEIKN------------VNSFRFVQKALEYE- |
4 | 3opyA1 | 0.13 | 0.11 | 3.83 | 0.75 | MUSTER | | TN-DNLFEETFNF---TKLGF-HATRSYVKNRSDFELTGISDSIKESFPLSEVVEAGRELRKPLQESVGYESEALLGYPYQGGVVIKLRLSNEKNNDLPGEVTFFTAS--IDKLKAKLIEIG--AEIIPSK----LVEFSTR---MG-DVIS--SSYPSLSKKITSPDF----------- |
5 | 6ap4A | 0.13 | 0.07 | 2.31 | 0.75 | CNFpred | | ---------QLRAVTTDGHRLALCEILASSTSSQ------------------------------------------------------------------LVQAIVPRKAVGELQRLLSIEDEQLTLL-----IGRELLNVTINTDITVRFTTKLID---------GKFPDYRRVIPRGG |
6 | 5v8wA | 0.11 | 0.04 | 1.60 | 0.39 | HHsearch-2 | | -----------------------------------------------------------------------------------------------------KPLLSGSIPVEQFVQTLEKHGFSDIVEDTA----KG-HIVLLQAETLIQIEE-DS-THIICDNDEMLRVRLRDLVLKFL |
7 | 5hamA | 0.12 | 0.12 | 4.12 | 0.89 | Neff-PPAS | | --YTENEITHLLTAQLDEKK-FSVQPAITFRNTALTEEMLKDYTAKGEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKL--SDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEAAVIPVLVAKYDKKDNQIILTFNDSLGNSINYDGQKLPKLIDKTLGNLP |
8 | 2lepA | 0.09 | 0.03 | 1.04 | 0.29 | HHsearch | | ----------------------------------------------------------------------------------------------------MLMITANPRVAQAFVDYMATQGVILTIQQHNQ--------------SDVWLAD------------ESQAERVRAELARF- |
9 | 2b2aA | 0.12 | 0.11 | 3.89 | 0.60 | SP3 | | TR-KEDLLTVLK--QISALYVSNLYEFLLATEKIVQTSELDTQFQEFLTTTIIASEQNLVENYKQMTIKQVIDDSIILLGNKQNYVQQIGTTTIGFYVEYRQTLYS-----SNFRNLLNIFGEE-DFK---YFLIDFLVFTKVEQNGYLQVAGVCLNQYFSVQVKQKKWYKNN------- |
10 | 1nnwa | 0.10 | 0.10 | 3.70 | 0.60 | PROSPECTOR2 | | VYVATAALSRIEEMREEGYEIEKYIEVIKDLTKKENIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEGSPINPFDGEVLAEQPTSYYEAIMRPVKYPVDAMTRYGRVVKATFALVDVDTLKPKFIEYDKKIIEERIRAEGLPEEIIKILYHGG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|