Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | IQRAQDYLLSIQYPEGYWWGELETNVCMAAEYLLLTHFLGAADRRRWDKIVEYLRRQQLPDGTWSIYHGGPSDLNATVEAYFALKLAGVSPDEPSMAKARQFVLSRGGVPKVRIFTKIWLALFGQWDWRGVPVLPPELMLLPSWFPINIYEFASWARATVVPMLIILTRRPVCPIPGEAHIDELYPAPREQVDYSLPKSDRLLSWKTLFLTTDKLLRLYERWGWKPFRRRAARAAEEWIVEHQEADGSWGGIQPPWVYSLIALKVLGYPLDHPVMAKGLEGFEGFAIEDE |
1 | 3sqcA2 | 0.48 | 0.43 | 12.53 | 1.77 | SPARKS-K | | ------------------------NVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGG-----GWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDM-TQHPAFIKGWEGLELYGVELD |
2 | 3sqcA2 | 0.48 | 0.43 | 12.53 | 3.16 | FFAS-3D | | ------------------------NVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGGGG-----WIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDM-TQHPAFIKGWEGLELYGVELD |
3 | 3sqcA | 0.49 | 0.48 | 13.92 | 12.61 | HHpred | | LDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGA-----KGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMT-QHPAFIKGWEGLELYGVELD |
4 | 3sqcA | 0.49 | 0.48 | 13.92 | 2.16 | MUSTER | | LDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRG-----AKGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDM-TQHPAFIKGWEGLELYGVELD |
5 | 2sqcA | 0.49 | 0.48 | 13.92 | 2.05 | CNFpred | | LDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGG-----GGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMT-QHPAFIKGWEGLELYGVELD |
6 | 1w6jA | 0.23 | 0.23 | 7.14 | 1.47 | HHsearch-2 | | ALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARILPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVSLQELYVEDFANPPDYQFHINPDGGFGTYVECTSAVMQALKYFHKRPEIRETLTQGLEFCRRQQRADGSWEGFTYGTWFGLEAFACMGQTYACAEVSRACDFLLSRQMADG |
7 | 3sqcA2 | 0.48 | 0.43 | 12.53 | 2.91 | Neff-PPAS | | ------------------------NVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGA-----KGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMT-QHPAFIKGWEGLELYGVELD |
8 | 3sqcA2 | 0.47 | 0.41 | 12.05 | 2.09 | HHsearch | | ------------------------NVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVIVMSRQPVFPL----PERARVPELYETDVPPRRRGA-----KGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMT-QHPAFIKGWEGLELYGVEG- |
9 | 2sqca2 | 0.48 | 0.43 | 12.54 | 1.93 | PROSPECTOR2 | | ----------------------LSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKG-----GGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMT-QHPAFIKGWEGLELYGVELD |
10 | 3sqcA2 | 0.48 | 0.43 | 12.44 | 2.62 | SAM | | -------------------------VTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGA-----KGGGGWIFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDMT-QHPAFIKGWEGLELYGVEGG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|