Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | RSLYRSLLRELPPRPILARNRSPIHSRIRSSFAEPAAAHPNAAAEAVQFLDYLRAQRVYATLLERYNPGMGMDEEERVRLTARRVGMD |
1 | 5x56A | 0.10 | 0.10 | 3.76 | 0.75 | SPARKS-K | | IKDTSAVISKVRSMQKTDPNVADAVAELREASNSWVAKYEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPRKARILEEMETAEKA |
2 | 5usrB | 0.23 | 0.17 | 5.34 | 0.74 | FFAS-3D | | -ALYRAMLRESKRFS-AYNYRTYAVRRIRDAFRENKNVKDEIQTLVNKAKRDLGVIRRQVHIGQLYS--------------------- |
3 | 5lnkg | 0.18 | 0.16 | 5.19 | 0.48 | HHpred | | RELYRAWYREVPNTVHLFISVKQGRDKVREMFKKNAHVVDLLVIKGKMELEETINVWKQRTHVMRFFHETEPRPKDFLS--------- |
4 | 5usrB | 0.22 | 0.17 | 5.38 | 0.95 | MUSTER | | LALYRAMLRESKRFSA-YNYRTYAVRRIRDAFRENKKDPVEIQTLVNKAKRDLGVIRRQVHIGQLYSTD------------------- |
5 | 3t06A | 0.12 | 0.10 | 3.65 | 0.48 | CNFpred | | IEIHNSWCEAMKKLREEGPIIKEISDLMLARFD-----GPAREELQQVAAQFCSYQSIALELIKTKQ-----RKESRFQLFMQEAESH |
6 | 5usrB | 0.26 | 0.19 | 5.95 | 0.74 | HHsearch-2 | | LALYRAMLRESKRFSA-YNYRTYAVRRIRDAFRENKNEIQTLVNKAKRDLGVIRRQVHIG---QLYSTD------------------- |
7 | 5usrB | 0.22 | 0.17 | 5.38 | 0.70 | Neff-PPAS | | LALYRAMLRESKRFSA-YNYRTYAVRRIRDAFRENKNVPVEIQTLVNKAKRDLGVIRRQVHIGQLYSTD------------------- |
8 | 5usrB | 0.28 | 0.20 | 6.26 | 1.06 | HHsearch | | LALYRAMLRESKRFSA-YNYRTYAVRRIRDAFRENKNEIQTLVNKAKRDLGVIRRQVHIGQL---YSTD------------------- |
9 | 5usrB | 0.22 | 0.17 | 5.38 | 0.79 | SP3 | | LALYRAMLRESKRFS-AYNYRTYAVRRIRDAFRENKNVKVEIQTLVNKAKRDLGVIRRQVHIGQLYSTD------------------- |
10 | 2w53A2 | 0.09 | 0.09 | 3.45 | 0.47 | PROSPECTOR2 | | HLPFMQELERTSTDQRDTSEDERLRKTMEIMLRSTEMQQAGFRDALDRMERALRRARDLGVLHGAMVEPELMDLKRDGMLALDMTPLP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|