Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | DFTIQYLSFFVINVEGQGEQANKTYKHYQTLDHTSYENHALKDFLDGELMKVAKRKVEQNPKSEQVPTKIGRFVVEPGYDLDTNPNYNQFNRIRLAETSEDFKRHSEQLVHAYMDTSAIRGGALLVIRAKLNKYMDDPFVFVLKCDFEQKVASITDEKTLIHHVNRAITTKNMKSIQYPYMPEEGMVEEWELKVHQSSHARYFEDFLKFVEYNKSMPELVKHQMIEMAQQHIADTYQEASPEREQEEEFIEAW |
1 | 6defA | 0.11 | 0.09 | 3.45 | 0.58 | SPARKS-K | | IVTRRPLVLQLINRQSSDTDKAANLDEWGEFLHLPGQKFYDFNKIRDEINRETEAKVGRNAGISPAPINLRIYSPHPGLTRVPVG-----------DQPRDIERQIRDMILKYIQKPNA---IILAVTAEVDPEGQRTIGVLTKVDMDEG-----------TDVVDILAGRIIPYVPVVNRGQRDIDNKKPI----TAALEAEKAFFENHKAAYCGTPYLARKLNLILMMHIKQTLPDIKQRISSSLQKYQQE |
2 | 4whjA1 | 0.13 | 0.11 | 3.96 | 0.62 | FFAS-3D | | ---------LVLKLKKQPCEAWAGRISYRNTELELQDPGQVEKEIHKAQNVMA-------GNGRGISHELISLEITS----PEVPDLTIID--LPGITPRDIGLQIKALIKKYIQRQQT--INLVVVPCNVDHEVDDRTIGILKPD-------LMDRGTEKSVMNVVRNLTYPLKKGYMIRGQQEITNRLSLAEATKKEITFFQTFRVLLEEGSRLAERLTTELIMHIQKSLPLLEGQIRESHQKATEELR-- |
3 | 2pffB | 0.20 | 0.12 | 3.81 | 0.47 | HHpred | | -------------------LENNEGVPSPMLSISNLTQEQVQDYVN-----KTNS---HLPAGKQVEIS----LVNGAKNLVSGPPQSLYGTLRKAKAP------------SGLDQSRI-----PFSERKLK--FSNRFLPVASPFHSHLLVPASD---LINKDVKNNVSFNAKDIQIPVYD---TFDGSDLRVLSGSISERIVDCIRL-------------------------------------------- |
4 | 5hamA | 0.14 | 0.13 | 4.31 | 0.59 | MUSTER | | ENEITHL------LTAQLDEKKFSVQPAITFRNTALTEEMLKDYTGEEKNKILAEVQETIKIANLIPDKEERALMLGDAKLSDAEREKLKNDLLR--GGEAQQQINEDILNRATKDIKDNGKTVLVAKYDKK---DNQIILTFNDSLGNSIN--YDGQKLPKLIDKTLGN------------LPNKPIIIDEQTKQSACGVFTVDNGIKIAKGQAITEESKGEKGLRLREHHAQILTDAMFKQDAQWIRQQ-- |
5 | 5a3fA | 0.09 | 0.08 | 2.98 | 0.61 | CNFpred | | ------PLVLQLVTSK-----AEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGI-------SIPINLRVYSPH-----VLNLTLIDLPGIT-QPPDIEYQIREMIMQFITR----ENCLILAVTPANTD-LRTIGVITKLDL---MDEGTDARDVLENKLLPLR---RGYVGVVNRSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIARMGTPHLQKVLNQQLTNHIRDTL---PNFRNKLQGQLLSI |
6 | 2pffB | 0.13 | 0.13 | 4.37 | 0.61 | HHsearch-2 | | QFDQVLNLCLTEF-ENCYLEGNDIHALAAKLL---QENDTTLVKTKELIKRIMKRPFDKKSNGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSN----TPDKDYLLSIPISCPLIGVIQLAHVTAKLPGELRSYLKSQGLVTAVAIAETDSSVRKATVLFFIYEAYPNTLPPSILEDSLEN-NEGVPSPMLSTQEQVQDYVNKTEIS |
7 | 5hamA | 0.09 | 0.08 | 3.02 | 0.72 | Neff-PPAS | | ----KFSVQPAITFRNTA------------LTEEMLKDYTAKGEEKNKILAEVQETIKIANLIPDKRALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEAAVIPIEMYDKKDNQIILTFNDSLG---NSINYDGQKLPKLIDKTLGNLPNKPIIIDEQTKQQTD-------QSACGVFTVDNGIKIAKGQSTEESKGEKGLRLREHHAQILTDAMFKQDAQWIRQQ--- |
8 | 3h7hB | 0.17 | 0.06 | 1.81 | 0.43 | HHsearch | | ---------------------------------------------------------------------------------------------------------------------------------------MDPNLWTVKC-------KIGEERATAISLMRKFIALQIKSVVAPHVK--GYIVEAY----KQTHVKQAIEGVGNLRLGNPIKEMTDV--LKV-----------VKE------------ |
9 | 2akaB | 0.09 | 0.08 | 2.90 | 0.82 | SP3 | | GSGIVTRRPLVLQL----VNSTTEYAEFLHCKGKKFTD------FEEVRLEIEAETDRVTGTNKGISPVPINLRV----YSPHVLNLTLMTKVPVGDQPPDIEFQIRDMLMQFVTKENC--LILAVSPANSDDPQGQRTIGVIT-----KLDLMDEGTDARDVLENKLLPLRRGYI--GVVNIDGKKDITAAL---AAERKFFLSHPSYRHLADRMTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL------ |
10 | 5hamA | 0.09 | 0.08 | 3.16 | 0.84 | PROSPECTOR2 | | DYQLDEKKFSVITFRNTALTEEM---------LKDYTAKGEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEAAVTVLVAKYDKKDNQIILTFNDSLGNS---INYDGQKLPKLIDKTLGNLPNKPIIIDEQTKQQTDQSAC-------GVFTVDNGIKIAKGQAITEESKGEKGLRLREHHAQILTDAMFKQDAQWIRQQ-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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