Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | DELLQNSIFDYVQSASIISAKELSVYLVDKCNAPNETFSTGRYKIYGDVCKFLDYLAKQGIIQLLRKDGVNDRVYG |
1 | 5nbcA1 | 0.17 | 0.14 | 4.75 | 1.09 | SPARKS-K | | VTQPRVEILKLFEKNKHLSPDDVFSKLKAQSTTGI-----------ATVYRVLNQFESAGIINRLKLDNEQ-VMYE |
2 | 2mh2A | 0.25 | 0.20 | 6.13 | 1.21 | MUSTER | | --GAPGIILRYLQEQRPYSAQDVFGNLQKEHGLG-----------KAAVVKALDQLAQEGKIKEKTYG--KQKIYF |
3 | 2mh2A | 0.25 | 0.20 | 6.13 | 1.07 | Neff-PPAS | | --GAPGIILRYLQEQNPYSAQDVFGNLQKEHGLG-----------KAAVVKALDQLAQEGKIKEKTYG--KQKIYF |
4 | 2mh2A | 0.25 | 0.20 | 6.13 | 1.06 | SPARKS-K | | --GAPGIILRYLQEQRPYSAQDVFGNLQKEHGLGK-----------AAVVKALDQLAQEGKIKEKTYGKQ--KIYF |
5 | 2mh2A | 0.25 | 0.20 | 6.11 | 0.64 | FFAS-3D | | ---APGIILRYLEQNRPYSAQDVFGNLQKEHGLG-----------KAAVVKALDQLAQEGKIK--EKTYGKQKIY- |
6 | 1p6rA | 0.16 | 0.13 | 4.38 | 0.34 | HHpred | | ISDAELEVMKVIWKHSSINTNEVIKELSKTSTW-----------SPKTIQTMLLRLIKKGALNHHK--EGRVFVYT |
7 | 5nbcA1 | 0.17 | 0.14 | 4.76 | 1.10 | MUSTER | | KTQPRVEILKLFEKNKHLSPDDVFSKLKAQGSTTG----------IATVYRVLNQFESAGIINRLKLDNEQ-VMYE |
8 | 1p6rA | 0.16 | 0.13 | 4.38 | 0.61 | CNFpred | | ISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSP-----------KTIQTMLLRLIKKGALNHHKE--GRVFVYT |
9 | 5nbcA1 | 0.15 | 0.13 | 4.41 | 0.36 | HHsearch-2 | | VTQPRVEILKLFEKDKHLSPDDVFSKLKAQG----------STTGIATVYRVLNQFESAGIINRLK-LDNEQVMYE |
10 | 6dk4A1 | 0.14 | 0.12 | 4.04 | 0.98 | Neff-PPAS | | -TPQRLCVLKILKRHEHPNIDELYIEIKKEYPSIS----------LATVYKNLNTLQEQGLVVEINVLNQK-TCYD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|