>PF13009 (341 residues) FEEWRQYAEEWLKEQYTGLDTAIQAVNKFFEVYLYNQHITKDPRQFLNISFNAPNYFELC FSNFKRSSAISLIKKTNVFIDWVLKNKFSFPDDFGRMRIPYEFHNPIKKFIPDNSSLNNI NLSESNKNVLPYRYIKNLRSMLCPDNATNFSDWQYAQSITHSVQGGSWIRIDKSLIDKND PDCVWKKRKPTVKERTNKGFNGWVYEIWSPAISVALYMKLLLPLRTYQVRMLDSGEADTY IYQQTKREEAGYWTKNNGPFKKGTNKHPSEKGAFRYFKDPITKQEMTGFFINTNKTADIN KDADQKGYEIPWQNEEALYWLAKLRNWQQKYNPLNKLASWT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | FEEWRQYAEEWLKEQYTGLDTAIQAVNKFFEVYLYNQHITKDPRQFLNISFNAPNYFELCFSNFKRSSAISLIKKTNVFIDWVLKNKFSFPDDFGRMRIPYEFHNPIKKFIPDNSSLNNINLSESNKNVLPYRYIKNLRSMLCPDNATNFSDWQYAQSITHSVQGGSWIRIDKSLIDKNDPDCVWKKRKPTVKERTNKGFNGWVYEIWSPAISVALYMKLLLPLRTYQVRMLDSGEADTYIYQQTKREEAGYWTKNNGPFKKGTNKHPSEKGAFRYFKDPITKQEMTGFFINTNKTADINKDADQKGYEIPWQNEEALYWLAKLRNWQQKYNPLNKLASWT | |||||||||||||||||||
1 | 6emyA | 0.09 | 0.06 | 2.49 | 1.00 | SP3 | -MTVCQLYAKQIRHRGNVKHNTKLGRERLMRILEQDRLGSCPIDS-VKLSDAKEWALRMKEKGLSYKTINNDKRSLKAAFYTAIQDDIR--------------KNPFDFQLSDVLDDDTEPK-----VPLTPAQEESFLSFIQGDKVYKHYDAIVILLGTGLRIS-ELCGLTDKDLDFENR--VIIVSHQLLRNTGV-----------------------------------------GYYIDEPKTQSGVRKIP----MNEEVYQ------AFQRVIKNRKGAKPF---------IIDGYANKQNGYPM--TAVDYGGMFGRLVKKYNKSHEEALPKTTT | |||||||||||||
2 | 6emyA | 0.11 | 0.08 | 2.83 | 1.07 | PROSPECTOR2 | MT-VCQLYAKQIRHRGNVKLGRERLMRILEQDRLGSCPIDVKLSDAKEW------ALRMKEKGLSYKTINNDKRSLKAAFYTAIQDDIRK--------------NPF-----DFQLSDVLDDDTEPKVPLTPAQEESFLSFIQGDKVY-------------------------------------------------------------QKHYDAIVILLGTGLRISELCGLTDFENRVIIV-------SHQLLRNTG------------VGYYIDEPKTQSGVRKIPMVIKNRKGAKPFIIDGYANFLFPMTAVDYGGMFGRLVKKYNKSHEEALPKTTT | |||||||||||||
3 | 5jjvA | 0.08 | 0.05 | 2.11 | 0.77 | SPARKS-K | SSQLEKVCKKARNAGLLGINTYALPLLKFHEYFSKAFNS---LKNI-----DEVMLAEFLSVYLSLATKKNYRIALLGLFSYIDKQNQDENEKSYI-----------YNITLKNISGVNQSAGNKLPTHLNNEELEKFLESIDKIEMSAKVR---------------------------------------------------------ARNRLLIKIIVFTGMRSNEALQLKIKDFTCYTILIKGKGDKYRAVMLKAFHIESELYPVKNDLLFCNQKGS------------------------------ALTQAYLYKQVERIINFAGLRREKNGAHMLR | |||||||||||||
4 | 5jjvA | 0.08 | 0.06 | 2.51 | 0.64 | FFAS-3D | SSQLEKVCKKARNAGLLGINTYALPLLKFHEYFSKAFNSLKDEVMLAE-------FLSVYTGGLSLATKKNYRIALLGLFSYIDKQNQDENEKSYI------YNITLKNI-----SGVNQSAGNKLPTHLNNEELEKFLESIDKIEMSAKVRAR---------------------------------------------------------NRLLIKIIVFTGMRSNEALQLKIKDFTCYTILIKGKGDKYRAVMLKAFHIESELYPVKNDLLFCNQKGSALTQAYLYKQVERIINFAGLRREKNGAHML--RHSFATLLYQKLILVQEALGHASLNT--- | |||||||||||||
5 | 5jjvA | 0.09 | 0.06 | 2.26 | 0.30 | HHpred | SSQLEKVCKKARNAGLLGINTYALPLLKFHEYFSKA-FNS--LK------NIDEVLAEFLSGGLSLATKKNYRIALLGLFSYIDKQNQDENEKS------YIYNITLKNISG----V-NQSAGNKLPTHLNNEELEKFLESIDKIEM------------S----------------------------------------AKV-----RARNRLLIKIIVFTGMRSNEALQLKIKDFTL---EN------GCYTILI---KGKG----DKYRAV-MLKAFHI-ESLLKEWLIERELY-----PVKNDLLFALTQAYLYKQVERIIN---FAG-LRR----- | |||||||||||||
6 | 3osqA | 0.09 | 0.09 | 3.31 | 0.79 | MUSTER | WEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYA---FKYENHLSHNVYIMADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRD----------HMVLLEFVTAAGITLGMDELYKGVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKCTTGKLPVPWPTLVTTLVQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNIL-------GHKLEYNFNGGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH-MNADTDYS | |||||||||||||
7 | 6emzA | 0.11 | 0.07 | 2.42 | 0.73 | CNFpred | --TVCQLYAKQIRHRGNVKHNTKLGRERLMRILEQDRLGSCPIDSVKLS--DAKEWALRMKEKLSYKTINNDKRSLKAAFYTAIQDD-------------CIRKNPFDFQL-----SDVLDDDTEPKVPLTPAQEESFLSFIQGDK-------------------------------------VYQK------------------------HYDAIVILLGTGLKISELCGLT-----DKDLDFE----NRVIIVS---------------HQLLRNT-------GVGYYIDEPKTQ-------SGVRKIP-MNEEVYQAFQRVIK--------------- | |||||||||||||
8 | 2pffB | 0.12 | 0.11 | 3.73 | 0.97 | HHsearch-2 | GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFSNSALFRAVGNNTDDFEELRD--LY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKLNILEWLENPSNTPDKDY--------LLSIPISCPLIGVIQLAHYVVTA-----KLLGFTPGELRSAETDSWESFFVSVRNTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQLGLNLTLRKAKAPSGLD----------------------QSRIPFSERKLKFS---NRFLPVASPFHSHLLDLINKDLVKNNVSFNAKDIQIKWE | |||||||||||||
9 | 3tnfB | 0.10 | 0.09 | 3.48 | 0.99 | Neff-PPAS | KGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSEINEKMEAFSKDSEKLTQLMEKQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDA-----HLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAV-HRKEKSFFNEKGE------EVTSLNDAHYVIGKDQQLFNLG-----GKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLE | |||||||||||||
10 | 3nrwA | 0.10 | 0.03 | 0.98 | 0.45 | HHsearch | SLSPREARDRYLAHRQTDIKSFRYRLKHFVEWAEE-RDIT------A--RELTGEYETFRRGDVSPATLNGE-QTLKNWLEYLARIDVVD-------------EDLPEKVHVP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |