>PF12954 (413 residues) KIFPKDWLQLHPYKQSTPVDSYYTGIANRIYDIMEKTELVNSFEGEETKQICIRMAAYFE DVISGMGIWRAFILTHKELYGKYLPFYTPDDHYYDDEVNLEDVRFLLWHYTQQYHGYRKG TFVSPDNPANESTGMLIYDLFCKEWTTAPENTRMAKLFALDTRYERQEDYDRLLQWFHYE SYILPESARELSDFAHDRWKEQPDLNQEQLNNLLVNSHGMMAYTSKTSLLGLTSPQWLAK ILPAEHPDHAVFQNTADESVATLPDDMLEENRQQYETFRKAAGGKLLLYFDKTEDAQTFI TETSGLIPAENFHLPEDWQGKKLAIYATPEEGAQVITRDVELIKDENNPFYDANRAAKQA LSFFIVKHCSVYFLKELVDRGMLADAQTKSLTSPERGKAIIQDNWKFLSRYFI |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KIFPKDWLQLHPYKQSTPVDSYYTGIANRIYDIMEKTELVNSFEGEETKQICIRMAAYFEDVISGMGIWRAFILTHKELYGKYLPFYTPDDHYYDDEVNLEDVRFLLWHYTQQYHGYRKGTFVSPDNPANESTGMLIYDLFCKEWTTAPENTRMAKLFALDTRYERQEDYDRLLQWFHYESYILPESARELSDFAHDRWKEQPDLNQEQLNNLLVNSHGMMAYTSKTSLLGLTSPQWLAKILPAEHPDHAVFQNTADESVATLPDDMLEENRQQYETFRKAAGGKLLLYFDKTEDAQTFITETSGLIPAENFHLPEDWQGKKLAIYATPEEGAQVITRDVELIKDENNPFYDANRAAKQALSFFIVKHCSVYFLKELVDRGMLADAQTKSLTSPERGKAIIQDNWKFLSRYFI | |||||||||||||||||||
1 | 5vchA | 0.09 | 0.08 | 3.09 | 1.05 | CNFpred | AQALSYVSSLIEEEINPQYAAKFASLIPSVVQVLDATIRE------GDTTNTKLIFNCLNDFLL--LDSQLTGNTIADLVKLALQIAVNSD-------VDEDIRVFAVQFVTSALVYRKSKINQ--AKLGPEITLAALKVASEEI-------DVEDELTNED-NTPALTALRLISNASGEL-SPSQVGVPIIEHLPTMLSSS----NPFERRSILLAISVLVTGSYTLSQFDKIIPATVTGLKDSEVQLAALKCIV-QLSTNLQDEVARYHEQYLPLVIDIIAKHVVIYKYATLALDGLLEFI---------------AHNDIIKY-----LDPLMNKLFQMLETQ--QSPKLRAAIVSAIGSCAFAAGFVPYFKTSVQYLFIQNVSQIE-GLSEDDIELKALTFENISTMGR | |||||||||||||
2 | 2pffB | 0.10 | 0.10 | 3.54 | 1.09 | HHsearch-2 | DALQEQFNKILPEPTEFAADDEPTTLVGKFLGYVSSLVEPSKVGQFDQ-VLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKELKNYITARPFDKKSNSALFRAVGEGNA-QLVAIFDDYFEELRDLYQTYHVLVGDLIKFSA--ETLSELIRTTLAEKVFTQGLNILEWLENKDYLLSIPI----------------------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATHSQGVTAVAIAETDWESFFVSVRKAITSILEDSLENNEGVPSPMISTQEQVQDYVNSHLPAG--KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKGLDQSRIPFSERKLKFSPVASPFHSLVPASDLINKDVKNNNAKDIQIPVYDTDGSDLSISERIVDCIIRLPV | |||||||||||||
3 | 1vt4I3 | 0.07 | 0.05 | 1.86 | 1.08 | HHsearch | ----------------------------------------------------------------EYALHRSIVDHYN------IPKTFDSDDLIPPYLD--------QYFYSHIG----HHLKNIEHPERMTLFRMVFLDFRF------------------------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC----DNDPKYERILDFLPKIEENLICSKYTD-----LLRIALMAEDEA---------------------IFEEAHKQVQRGGGGGGGGGGGGGG---------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGGGGGGG---------- | |||||||||||||
4 | 3oc3A2 | 0.13 | 0.11 | 3.96 | 1.04 | PROSPECTOR2 | SIPPERLKDIFPCFTSPVPE-----VRTSILNMV------KNLSEESIDFLVAEVVMAIKLLKKRRDLPKNLILHFMNVIGGSLPYSEDDFVSYEDLVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRTFISLYRSVQALVKDTPYTEELEYYFDRCKDMAPLKEFKKKLSAPGIRSIHPMVDPLYSDYTRMVASIEFPGLERATALFEVETCKQFLHL----------FSKMITEYYDAEKISIDNFLLKAYEGLASGKDGFLSFFEVFNTRLLA---HSFFHKIGSLENRLDFFSKTIH--------------------IYTKTSQIQKIGFVFDDALREKNIFMRSLEFNEKFVRKAL-EDLDVELLDAVLMSGDHSLRNISGNIDREASSKVLSKSKDLLEMISL | |||||||||||||
5 | 2jktA | 0.07 | 0.06 | 2.54 | 0.78 | SPARKS-K | GLALHCIANVGS-----------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTLVPMGDWTSRVVHLLND----------------QH----LGVVTAATSLITTLAQKNPEEF--------KTSVSLAVSRLSRIVTSASTDLQ----DYTYYFVPAPWLSVKLLRLLQCYPPPVRGRLTECLETILNKAQEPPKQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVAMCDRSNAQQIVAEMLSYLETADYSIRELAEKYAVDY----------TWYVDTILNLIR-IAGDYVSE-EVWYRVIQIVINDDVQGYAAKTVFEAL-----------QAPACHENLVKVGGYILGEFG | |||||||||||||
6 | 5o9zG | 0.11 | 0.09 | 3.27 | 1.00 | FFAS-3D | ---IDRAITSLRANGVEINREQWIQDCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAIYAYALQKKSVWLRAAYFEKNH------------------GTRESLEALLQRAVAH----------CPKAVLWLMGAKSARSILALAFQANPNSLAAVKLESENDEYERARRLLAKARMKSVKLEWVQDNIRAAQDLCEEALRHYEDF------PKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQ------LTRARAILEKSRLKNPKNPGLWLGLKNIANTLMAKALQECPNSFLEARPQRRTKSVDALKKCEHDPHVLLAVAKLFWSQRK-----ITKAREWFHRTVKIDSDAFFYKFELQHGTEEQQ-----------EEVRKRHGELWCAV-- | |||||||||||||
7 | 2pffB | 0.09 | 0.06 | 2.40 | 0.54 | HHpred | -------------------------------------------------------------------------------YS-TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK----ILPEPTEDEPTTPAELVGKFLGYVSSLV-----------EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT----TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFGGQGN-TDDYFEELRDLYHVLVGDLIKFS----------AETLSELIRTTLEWLENP-----SNTPDKDYLLSITPSQGLVTAVAIAET-----DSWESFFKAITVLFFIGVRTSLPPSILEDSLENNEVPSPMLS---ISNLTQEQVQDYVNKTNSHLP | |||||||||||||
8 | 4rxhB | 0.09 | 0.08 | 3.03 | 0.70 | MUSTER | IQATTKFRKLLSKERNPPIEEVIKTVVGRFVEFLR------SPHTLVQFEAAWALTNIAATQTQVVGAVPIFVELLG------------SPE--------PDVREQAVWALGNIAGDSP--------QCRDYVLSCALRPLLTLLGDSRKLSTLSNFCRGKTPQPDWNTIAPALPVLAKL--VYSLD-DEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELASTSVQTPALRSVGNIVTGDDVQTQVIINCGLSLLSSNKDGIRKEACWTISNITAGNSAQIQSVIDA---IIPPLIHLLSHADLK-SNATSGGLQKPDQIRYLVAQG--CIKPLCDLLACPD------NKIIQVALDGLENAASINRYALFIEECGGME--KIHDCQTNAN-EEIYMKAYNIIEKYFS | |||||||||||||
9 | 5uwtC | 0.09 | 0.07 | 2.79 | 1.05 | CNFpred | TADLKATYAN-ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIFKTTLDYWHNLVADLFYE---------------KKHIYEEICSQLRLVIIENMV----------KESDTIQLYKSEREVLVYLTHLNVTEEIMISKLARQISEWSWHNINTLSWAIGSISTMSEDTEKRFVVTVIKDLLGLCEQKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVIL------ALFEFMHET-----HEGVQDMACDTFIKIVQKCKYHFVIQQ-SEPFIQTIIRDIQK-----------------TTADLQPQQVHTFYKACGIIISEE-----RSVAERNRLLSDLMQ--LPNMAWDTIVEQS-------PTLLLDSETVKIIANIIKTNVAVCT | |||||||||||||
10 | 1vt4I | 0.10 | 0.10 | 3.56 | 0.93 | HHsearch-2 | DAFVDNFDCDVQDSILSKIDHIIMKAVSGTLRLFWTL-LSKQFVEEVLRINYKFLMSPIKTEQRQPSMMRMYIEQRDRLYNDNQVFA-----KYNVSR-LQPYLKL-RQALLELRP-AKNVLIDGVGKTWVALDVCLSYKVQCKMDFK------IFWLNLKNSPETVLEMLQKLLYQIDPNWTSRSDHKLRIHSIQAELRRLLKSPYENCNVQNAKAWNAFNL-SCKILLTTRVTDFLSAATTTHISLEKSLKYLDPEVVNCLIESSLNVLRKMFDRLSVFPPSAHIPTILIKSDVMVVVNKLHKYSLVSTISIPSIYL-ELKVKLENEYALHRSIVDYNIFDSDDLIPPYLDQYFYSHIGHHLKNLFRMVFLDFRFLEQKHDSTAWNASGS-----ILNTLQQLKFYKPYIC | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |