Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | SGGFAGRYPVNSGQPSMSFPHNNLMNNMAGTAVTGGGNNNANMTALQVQKYLNQGQHGVAVGPQAVGNSSAVSVGFGQNTSNATVAAAASVNIAANTNNQPSGQQIRMLGQQIQLAIHSGFISSQILTQPLTQTTLNLLNQLLSNIKHLQAAQQSLARGGNANPMAVNVAISKYKQQIQNLQNQINAQQAVYVKQQNMQPTSQQQQQQQPQQQQHPSVHLSNSGNDYLRGHDAINNLQN |
1 | 1ls4A | 0.19 | 0.13 | 4.05 | 0.72 | SPARKS-K | | -------------------------------RPDAAGHVNIAEAVQQLNHTIVNAAHELHETLGLPTPDEALNLLTEQNAFKTKIAEVTTSLKQEAEKHQGSAEQLNAFARNLNNSIHDAATSLN------LQDQLNSLQSALTNVGHQWQDIATKTQASAPVQSALQEAAEKTKEAAANLQNSIQSAVQKPAN--------------------------------------------- |
2 | 3j65o | 0.06 | 0.04 | 1.64 | 0.59 | FFAS-3D | | ---------------------------------------------------------------------------------DIVLNRTQRKTPTVIRPGFKITRIRAFYMRKVKYTGEGFVFEDILKGFPVHPFHRDLMDISLAAISRAKSLVEQVARKFGQSLFQCKQLKRAALGRMATIVKKLRDPLAYLEQVRQHIGRLPSIDPNTR---TLLICGYPNVGKSSF-----LRCITK |
3 | 4k1pA | 0.14 | 0.08 | 2.72 | 0.30 | HHpred | | -----------------------------------------GSQSPLIQAYGLVIQPD---------------IKVNAMSS---LTN-HQKFAKANVREWEYNPKLIDLNQEMMRYSINSYYSKLLADEQSKADFTNAYGKLQLQVQSIQENMEQDLKTIKADEAIKTLDIVKLREDIKRIQGEIQAELTTILNRPQE----------------------------------------- |
4 | 5cwpA | 0.10 | 0.09 | 3.40 | 0.75 | MUSTER | | ---------MSSDEEEARIERAKEAAERAQEAAERTGDPRVRELARELKRLAQEAAEEVKRDPSSSDVNEALKL--------IVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAA---EEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEESGDPEKREKARERVREAVERAEEVQRDPS |
5 | 4ifqA | 0.10 | 0.04 | 1.57 | 0.55 | CNFpred | | -------------------------------------------------------------------------------------------------------LRRQYILQIVSFIVNC-ELYQELIKNALVSNILSAFKFIHTQLSEIKQQINKAQILENYN-ALFQQNIKFRRDFLLREYDILSQILYGLVDKG-----------------------------AIMKNKDFILSLLH |
6 | 1r8iA | 0.12 | 0.07 | 2.39 | 0.52 | HHsearch-2 | | KTNLGDLLGTSNT--LANNLPDNW-KEVYS-DAMNSSSS-V---TPSVNSMMGQFNA----------------EVDD-------------------MTPS-E--AIAYMNKK---LAEKGAYDR--------VMAEKAYNNQMQELSDMQALTEQIKSTPDL-------------KSIADLQARIQTSQGANMLQQSQDKLLRAQK--DRA---------------------------- |
7 | 4ci6B2 | 0.09 | 0.09 | 3.35 | 0.92 | Neff-PPAS | | -----RRITPYYLRELSDLLRTHLSSAATKQLDMGVVLSDLDTMLVALDKAEREGGVDKDQLKSFNSLILKTYSVIGAYILSIVEPSLQRIQKHLDQTHSFSDIGSLMRAHKHLETLLEVLVTLSQQGQPVSSETYSFLNRLAEAKVTLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVVKGTEQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTADSIPLLI |
8 | 3he5A | 0.15 | 0.03 | 0.99 | 0.42 | HHsearch | | ----------------------------------------------------------------------------------------------------------------------------------------------SNLVAQLENEVASLEN----ENETLKKKNLHKKDLIAYLEKEIANLRK-----KIE----------------------------------------- |
9 | 2z6bA | 0.09 | 0.09 | 3.37 | 0.65 | SP3 | | TGQYPRRLYDSSSNVIQDSNLDTAINPDDRPLSEIPTDDNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLAD-MQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSLLAMAATVAKSSDPADPPIP |
10 | 3kvnX1 | 0.10 | 0.10 | 3.60 | 0.91 | PROSPECTOR2 | | HHHHLEAPSPYSDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGNQLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSRDGYLVDRARQGLGADFLQGRILNDVQAAAGRLVDSVQALQQLGLTPATFGGPLQPFASQLSGTFNAELTAQLSQAIPLLLKEGMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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