>PF12735 (324 residues) TSYFDCPVELTSIRLSVADGGMVEDLNASDTSGLSLPMSCVPHDHVTFLYRLSPPQQLDL PSSKNPSRDLDIHIEAIVQRQPGLCTPRLTMKWSTTLDFTLPVNPGFNAAMQPMQPIQRS HRPSQLSINGIEAAQSLVAPAVSRPDSLPSLEAATRSIEAPLPELGITMTFCGPEGPIYT GEVFSWTVFVVNRSAEKANVPAAPPRKLALVAIPKRRRNEVRLMRPPSTSGRGKTASDAK ELADAVLDENVLHAMQRNSVVESTEVVCLTADSRVGPLAPGACHVVEIKFLPLKEGIVGI EAVRVIDLGSQEHVDVRDLPIMFV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TSYFDCPVELTSIRLSVADGGMVEDLNASDTSGLSLPMSCVPHDHVTFLYRLSPPQQLDLPSSKNPSRDLDIHIEAIVQRQPGLCTPRLTMKWSTTLDFTLPVNPGFNAAMQPMQPIQRSHRPSQLSINGIEAAQSLVAPAVSRPDSLPSLEAATRSIEAPLPELGITMTFCGPEGPIYTGEVFSWTVFVVNRSAEKANVPAAPPRKLALVAIPKRRRNEVRLMRPPSTSGRGKTASDAKELADAVLDENVLHAMQRNSVVESTEVVCLTADSRVGPLAPGACHVVEIKFLPLKEGIVGIEAVRVIDLGSQEHVDVRDLPIMFV | |||||||||||||||||||
1 | 1fieA | 0.11 | 0.06 | 2.22 | 1.40 | CNFpred | ---NRYTITAYLSANITFYGVPKAEFKKE-----TFDVTLEPLSFKKEAVLIQAGEYMG------LLEQASLHFFVTARIN---ETRDVLAKQKS-TVLTIP---------------------------------------------------------------EIIIKVRG---TQVVGSDMTVTIQFTNPLKE-------TLRNVWVHLDG-------------------------------------------------PGVTRPM-KKMFREIRPNSTVQWEEVCRPWVSGHRK--LIASMSSD--SLRHVYGELDVQI | |||||||||||||
2 | 5ay6A | 0.08 | 0.07 | 2.72 | 1.21 | Neff-PPAS | -KTTRVGVNANRSEQPVAAAVSYKVGTAGSPSKTNVVDSATNSHNYDVVYSSTGIANPVSGNNEKENGVIVATGKVAYDAATNE-----LVSSTIDYKGASPVTGSMTTTRINAAGTTVNLADLGIVNASGADDAEVVAGKLYDPSTWSMSDYAKDNSKGVKPDFEVQIPLSDSK-----GGQRTVTLSMLKGPGKPGDLANNGNGQISTGIIEFTTDGKLKNTGSLFGTTSP--------------TAITIKSSGYIAPTVTPPAVQPPTPPTWADALGIDEQEVQIDLASAAGGLTQYNSSVVQSVNTN------------- | |||||||||||||
3 | 5ay6A | 0.10 | 0.08 | 3.13 | 1.07 | PROSPECTOR2 | KT--------TRVGVNAPVAAAVSYKVGTAGSPSKTNVVDSATNSHNYDVVYSSTGIANPVSGNNEYLVDVIVATGKVAYDAATNE---LVSSTIDYKGASPVTGSMTTTRINAAGTTVNLADLGIVNASGADDAEVVAGKLYDPSTWSMSDYAKDNSKGVKPDFEVQIPLSDSKGGLKGPGPNQWYAELRAKPGDLANNGNGQISTGIIEFTTDGKLKNTGSLFGTTSPTAITIKSSGY-----------------IAPTVTPPAVQPPTPPTWADALGIDEQEVQIDLASAAGG--------LTQYNSQSVVQ----SVNTN | |||||||||||||
4 | 3l8qA | 0.09 | 0.08 | 2.93 | 0.86 | SPARKS-K | ------MAPTSSIEIVLD--------KTTASVGEIVTASINIKNQLNMKYDLQPVTSSGVAYTKSTMPGAILNFSKAYVSLAAAPEQTAVVKFKVL--------------KEETSSISFEDTTSVPNAIDGTVLFDWNGDRIQSGYSVIQPAVINLDMTKAS-----YITMGYDKNAAEVGEIIKATVKINK-------ITNFSGYQVNIKYDPTVTGVAYTNSSLPTSGELLVSGPIVQKISEGILNTALEVYRASESPEETGTLAVVGFKVL----QKK---ATTVVFEDSETMPNGITGTTLFNWYGNR---IQSGYFVIQ | |||||||||||||
5 | 4ll1A | 0.11 | 0.08 | 2.92 | 0.68 | FFAS-3D | ---------IKSFEVVFNDPEKV----------------YGSGEKVAGRVIVEVCEVTR-------VKAVRILACGVAKVLWMQGSQQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKPQGPLGTSFTQETKKNFEVVPDLMAPVSAKKEKKVSSMFIPDGRVSVSARIDRKGFCEGDEISIHADFENTSSRIVVP------KAAIV-------------------------------------ARHTYLANGQTKVLTQKLS----SVRGNHIISGTCASWRGKSLRVQKIILRVEYLLIVSVPGSKKVILD--LPLVI | |||||||||||||
6 | 1l9mB | 0.12 | 0.08 | 2.72 | 0.53 | HHpred | --------------------------------SIIGAGMLAVGKEVNLVLLLKN-LSR-------DTKTVTVNMTAWTIIY---NGTLVHEVWKDSATMSLDPEEEAEHPI----KISYQYERY-LKSDN-----MIRITAVCKVPD-ES-EVVV-ERDIILDNPTLTLEVL---NEARVRKPVNVQMLFSNPLDE--------PVRDCVLMVEG------------------------------------------------SGLLLGNLKIDVPTLGPKERSRVRFDILPSRSGTKQL----LADFSCNKFPAIKAMLSIDV | |||||||||||||
7 | 5ay6A | 0.11 | 0.10 | 3.64 | 0.89 | MUSTER | TTRVGVNANLRS-EQPVAAAVSYKVGTAGSPSKTNVVDSATNSHNYDVVYSSTG---IANPVSGNNEYLVDIKENGVIVATGDAATNELVSS--IDYKGASPVTGSMTTTRINAAGTTVNLADLGIVNASGADDAEVVAGKLYDPSTWSMSDYAKDNSKGVKPDFEVQIPLSDSKGGLKGPGPNQWYAELRAKPGDLANNGNGQISTGIIEFTTDGKLKNTGSLFGTTSPTAITIKSSGYIAPTVT-----------PPAVQPPTPPTWADALGIDE------QEVQIDLASAAGGLTQYNSSVVQSVNTN------------- | |||||||||||||
8 | 1ex0A | 0.12 | 0.06 | 2.30 | 1.39 | CNFpred | -----YTITAYLSANITFYGVPKAEFKKE-----TFDVTLEPLSFKKEAVLIQAGEYMG------LLEQASLHFFVTARIN---ETRDVLAKQKS-TVLTIP---------------------------------------------------------------EIIIKVRG---TQVVGSDMTVTVQFTNPLKE-------TLRNVWVHLDG-------------------------------------------------PGVTRPM-KKMFREIRPNSTVQWEEVCRPWVSGHRKL--IASMSSD--SLRHVYGELDVQI | |||||||||||||
9 | 1f13A | 0.13 | 0.12 | 4.19 | 0.59 | HHsearch-2 | QSSPKCIVGKFRMYVAVWTPYGVLRTSRNP--ETDTYILFNPWDDIGVIFYGEV-NDIDDGVSLGIPRIVTLQMDIFL-EEDGNVNLTKDSVWNYHCWMTRDLPVGFGWQAVPQENSDGRCGPASHVVEDATHGKVTKQIGGGMMDTYKFQEGQLKTEGVMKSRSNVDMDFEV--ENAVLGKDFKLSITFRNNSHN--------RYTITAYLSANIT-FYTGVLEPLSFLGEYMGLLEQPEIGTQVVGSDPLKETLRWVHLDGPGVTRPM-KKMFREIRPNSTVQWEEVCRPWVSGHRKL----IASMSSDSLRHVYGELDVQI | |||||||||||||
10 | 3j8dA | 0.07 | 0.07 | 2.81 | 1.09 | Neff-PPAS | KPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKQVQLLQPGAELVKGYTFTNWWMHWVRLRPGRGLEWIGRIDPNSDVNKYNEKFENRASLTVDKHSSTAYMQLTSEFFPWYFDVWGTGTTVTVSRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYTSTSPIVKSFNRSAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVT--------LTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |