Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | EMAANSGCLYDLDKERVTVPFLNQKYLVTYPHGQVTYAHDNSEAPIITAILLLHYLTNATGIELSNNWISFKELQGGSIYIEPFQHRAIIPFVKKFGGYPQDFAKAAEKLGGKKAEHGDVSYIIPALPKVPLLYILWEGDEEFPPNGTILFDNYANAYLATEDFAFLAGMTV |
1 | 3vneA | 0.14 | 0.12 | 4.16 | 1.00 | SPARKS-K | | DLCN---FLVTPTVQGWKVYWAGLEFDVNNQQSEVQT-------PIWALRVILAAGILDQLEPLSGNLIALTTSTN-HFNMRTVKDQLSMRMLSLIRSNIINFINKLETLHVVEIGTPSYAIIITRTNM-GYLVEVQEPDKSGPVKFSLLHESTLKPVAT------------ |
2 | 4nf9A | 0.10 | 0.10 | 3.61 | 0.54 | FFAS-3D | | ELLDQLSLVVEWSDDQAVFTFVYDTIQLTIVDVNFQSLLDEDQAPPSSLLLIFQYVEEKE--SWKKTCTTQHQLPK--------LEEFSLVVHRLLGEEIEYLKRWGPNYNLIDINNNELRLLFSAFAKFEITLFLSAYYPSVPLPSTIQNQDDIATILSKNVVKQIYQDLF |
3 | 3j38z1 | 0.17 | 0.12 | 3.84 | 0.27 | HHpred | | ---------------------PMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYSEWGENNAKTKKWQKQK----EADNKRSFCMYILDPIYKVFDYKKEEIGTLLEKIGVTLK-HED-----------------------KDKDGKALLKTVMRTWLPAGEA--LLQMIA |
4 | 2x0lA | 0.11 | 0.10 | 3.77 | 0.69 | MUSTER | | VVSKQVNMELAKKQKCPLYEANGQADTVKVPK----EKDEMVEQEFNRLLEATSYLSHQLDFNLNNKPVSLGQAEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVK------PPRDITAEFLVKSKHRDLTALCKEYDELAETQGKL |
5 | 6asyA | 0.11 | 0.10 | 3.54 | 0.71 | CNFpred | | QDIKFLPFKVVEKKTKPYIQ-----VDIGG-GQTKTF------APEEISAMVLTKMKETAEKKVTHAVVTVP------AYFNDAQRQATKDAGTIAGRIINEPTAAAIAYGLDKREGEKNILVFDLG-GGTFDVSLLTID---NGVFEVVATNGDTHLGGEDFDQRVMEHFI |
6 | 2pffB | 0.11 | 0.09 | 3.38 | 0.74 | HHsearch-2 | | ------MDAYSTRPLTLSHGSLEHVLLPEPTEG-F-AAD-DEPTTPELVGKFLGYVSSLVEPSKVGQFDCLTEFENCYLEGNDIHALAAKLLQE-NDTTKELIKNITARIMAKRPDKKS-------------NSALFRAVGEGNAQLVAIFGNTDDYFEELRDLYQTYHVLV |
7 | 1jx0A | 0.12 | 0.12 | 4.08 | 0.63 | Neff-PPAS | | -------GERGLTIEGNFIKFTAIGVYLEDIAVASLAAKKGKSSEELLETLDFYRDIISGPFEKLIRGSKIREL-SGPEFSRKVMENCVAHLKSV-GTYGDAEAEAMQKFAEVNFPPG-ASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVSPDLKRCLAARLP |
8 | 3gmyA1 | 0.12 | 0.05 | 1.63 | 0.32 | HHsearch | | --------------------------------------------------------------YTGFTPERYNKIQFG---------------------DRTL---VWQLAGADQSC----S-------DQVERIICYNNPDHYGPQGHFFFNADKLIHKRQ----------- |
9 | 3epuA | 0.05 | 0.03 | 1.43 | 0.75 | SP3 | | QFSLKLNTDSIVENRLCSFII-DYRILLTSTNSMIYGFCGKPPDNLAFEFLNANLWFAENNGNNSQSLLLALNFS-----LNESSVEKLECEIEVVIRSMENLYHILQDKGITLDTD------------------------------------------------------- |
10 | 2r2dA | 0.08 | 0.08 | 3.16 | 0.64 | PROSPECTOR2 | | NSTFVTPQKPTVSSRLIDIPVSA--YLIQCTDATVECMGTNGRWPAQSQLNLPERLRQLGLSPDDISTVCVEYFGKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNSGMLGLAVRLEKQPGFLLVNYGPPARRAG-----VLHDTIGYDRVSHIRQYAESRS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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