>PF12600 (442 residues) GGEVKRLRFEARQIEFYPRGWQARNVRITNDPFSPPELELRADQVTLTREAPLIDRITTQ RQRLVLDQNVVIPIPVNQQTIDRRERETSPFIVSPGYDGDKRGGLFVERGFTVINTEQTR LGITPQFFVQRAIQGSDNLASLFGVKARLNAVLSPTATLQGSGELTSFDFDTIDENLKAS LRLRQTLGNVNPHVVNWEYSYRDRLYNGTLGFQTVQSSLGGVITSPVIALGQSGVNLSYQ AGAQYINANTDRQDLLDVNRDNDRISLGRLQGSVALSKGFLLWQGKPLAPTATEGLRYTP TPVVPYLQAVAGVTGTTSYYTNGDNQNTLTGSIGLLGQLGNFSRPFLDYTAFNVTYSQGL NSGLSPFLFDRSVDNKVLSAGISQQIYGPLRLGFQTSINLDTGRESSTDYIVEYSRRTYG ITLRYNPVLELGGLSIRISDFN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | GGEVKRLRFEARQIEFYPRGWQARNVRITNDPFSPPELELRADQVTLTREAPLIDRITTQRQRLVLDQNVVIPIPVNQQTIDRRERETSPFIVSPGYDGDKRGGLFVERGFTVINTEQTRLGITPQFFVQRAIQGSDNLASLFGVKARLNAVLSPTATLQGSGELTSFDFDTIDENLKASLRLRQTLGNVNPHVVNWEYSYRDRLYNGTLGFQTVQSSLGGVITSPVIALGQSGVNLSYQAGAQYINANTDRQDLLDVNRDNDRISLGRLQGSVALSKGFLLWQGKPLAPTATEGLRYTPTPVVPYLQAVAGVTGTTSYYTNGDNQNTLTGSIGLLGQLGNFSRPFLDYTAFNVTYSQGLNSGLSPFLFDRSVDNKVLSAGISQQIYGPLRLGFQTSINLDTGRESSTDYIVEYSRRTYGITLRYNPVLELGGLSIRISDFN | |||||||||||||||||||
1 | 4q35A | 0.09 | 0.09 | 3.43 | 1.19 | SPARKS-K | QMVGRQGRGKADLMKQRGENTILDNGSFTSCLPGSDTWSVVGSEIIHDREE---QVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFL-IPNAKYTT--TNYFEFYLPYYWNIAPNMDATITPHYMMELDYHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSNDFDNKYGSDGYATQKFSVVQNFNATVSTKQFQVFSEQNTSSYSAEFDTRIYGQAVHFVNTRDDINTEAKFLATHYQQTNLDWYNSRNTTKLDE-SVNRVMPQFKVDGKMVIYNYDSSLLQSDRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITSLVWAGDTYWRISERWGYIQAQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERQHNAIGFNIELRGLS | |||||||||||||
2 | 4q35A | 0.11 | 0.10 | 3.71 | 1.18 | FFAS-3D | -TNVWEGDYKADLMKQRGENTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQ---VAEIWNARFKVGP---VPIPYLQLPVGDKRRSGFLI-PNAKYTTTN--YFEFYLPYYWNIAPNMDATITPHYMHRRGNHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDYGSSTDGYATQKFSVGYA---VQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNNLPLSNNWGSINTEAKFLATHYQQTNLDWYNSRNTTKLDESVRVMPQFKVDGKMVFERDPYRDQSDIYNYDSSLLQIASANQVTTGVTSRIY---DDAAVERFNISVGQIYYFTESRDDKTGSLVWAGDTYWRISERRGGIQYDYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYEVYDNAIGFNIELRGLS | |||||||||||||
3 | 4q35A | 0.11 | 0.10 | 3.72 | 1.79 | HHpred | -YQMRQGRGKADLMKQRGEYTILDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGDK-RRSGFLIPNAKYTTT--NYFEFYLPYYWNIAPNMDATITPHYMHRRGI----------MWENEFRYLSQA-GAGLMEL--DYLPSDKDDSSRRWLFYWNHSGVMDQNFNATVSTKQFQVFSEQ--NTSSYSAEPQLDVNYYQNDVG--PFDTRIYGQAVHFVNTRD-----------DMPEATRVHLEPTINLPLSN-NWGSINTEATNKLDESVNRVMPQFKVDGKMQYLYVPYRDQDSASANQVTTGVTSRIYD-D-AAVERFNISVGQIYYFTEDKTGSQYDSKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNAIGFNIELRGLS | |||||||||||||
4 | 1vw1A | 0.08 | 0.08 | 3.25 | 1.05 | MUSTER | LEKNRAPGLYCAGYQ--GEDTLLVMFYNQQDTLDSMQGLYIFADMASKDMTPEQSNVYRDNSYQQFDTNNVRRVNAEDYEIPSSVSSRKDYGWGDYYLSMVYNGDIPTINYK-AASSDLKIYISPKLRIIHNGYEGGKLGDKFIVYTSLGVNSSNKLMFYPVYQYSGNTSGLFHRDTTYPSKVEAWIPGAKRSLTNQNAAIGDDYATDSLNYIFMTDSKGTATDVSGPVEINTAISPAKVQIIVKAGGKEQTFTADKDVSIQPSPSFDEMNYQFN-ALEIDGSGLNFINNSASIDVTFTAFAEDGRKLGYESFSIPVTLKVSTDNALTLHHNGAQYMQWQSYRTRLLSMTEPQLGKGFYATFVIPPYNLSTHGDERWFKLYIKHVVDNNSHIIYSGQL--TDTNINITLFIPLNQDYHAKVYMTFKKGTWWGPHFVRDDKGI | |||||||||||||
5 | 4q35A | 0.10 | 0.08 | 2.95 | 2.20 | CNFpred | ------GRGKADLMKQRGRYTILDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGD-KRRSGFLIPNAKYTT--TNYFEFYLPYYWNIAPNMDATITPHYMHRR---------GNIMWENEFRYLSQ---AGAGLMELDYLPSDKVYESRRWLFYWNHSGVMDQVWRFNVDYTKVSYFNDFDNKYGSSTGYATQKFSVGYAV-----QNFNATVSTKQFQVFS-----------EQNTSSYSAEPQLDVNYYQND---------------------VGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLS-WGSINTEAKFLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVD-GKMVFERDMEM---LAPGYTQTLE----PRAQYLYVPY--------------- | |||||||||||||
6 | 4q35A | 0.12 | 0.12 | 4.14 | 3.07 | HHsearch-2 | DTNVRQGRGKADLMKQRGEYTILDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGDK-RRSGFLIPNAKYTTT--NYFEFYLPYYWNIAPNMDATITPHYMHRRGIMWENEFSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPFNDTDGYATQKFSVGYAVQ---NFNATVSTKQFQVFSEQ--NTSSYSAEPQLDVNYYQNDVG--PFDTRIYGQAVHFVNTRDRVPLSNQTNLKLDESVNRVMPQFKVDGKMVFERDMGYTQEPRAQYLYVPYRIASANQVTTGVTSR--IYDD-AAVERFNISVGQIYYFTESKTGSLNVATSQLNYHYASPEYIYSTAEQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNAIGFNIELRGLS | |||||||||||||
7 | 2qqpG | 0.07 | 0.07 | 2.79 | 1.32 | Neff-PPAS | GTMDPPVHEICASIDPSEGAVGWFYKYM--DPAGAVESGKALGEFSKVPDGL-------LRYSVDAEQRPIVTIECPTVSESDLPLDGKLWRVSFISFPAFRLNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQ--------WAQFAPGWYYSIYVLPNTYAMAEIGDRTDSVTQFRKVYKIDQGWWVGAHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTAPASILAEGEPFAEEGDTTSFSMTTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEVPKYEQFLCKESGGAYIVHYKMNNGEENFGGFQFHYPGYDLGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGW | |||||||||||||
8 | 4q35A | 0.11 | 0.10 | 3.43 | 3.73 | HHsearch | DTQMRQGRGKADLMKQRGEYTILDNGSFTSCLPGSDTWSVVGSEIIHDRE---EQVAEIWNARFKVGPVPIFYSPYLQLPVGDK-RRSGFLIPNAKYTTT--NYFEFYLPYYWNIAPNMDATITPHYMHRRGI----------MWENEFRYLSQA-GAGLM--ELDYLPSDKVDSSRRWLFYWNHSGVMDQNFNATVSTKQFQVFSEQ--NTSSYSAEPQLDVNYYQNDVG--PFDTRIYGQAVHFVNTRD-----------DMPEATRVHLEPTINL---------------------PLS-NNWGSINTEAKFLATHYQQTESVVMPQFKVDGKMV---FERDMPGYTEPRAQYLYVPYRDDIYYDLDRIASANQVTTGVTSRIYDRFNISVGQIYYFTESGSLVWAGDTYWRIEGLRGGIQYDTRLDNSSIEYRRDDR- | |||||||||||||
9 | 4aq1A | 0.07 | 0.07 | 2.88 | 1.24 | PROSPECTOR2 | AVTTVKVTFTVTKATLSRDK-KSVEVVVNKPFTRNQEYTITATTGKFVWSVQDAVTVALNNSSLKVGEESGLTVNTNIVVVSSGEVSVSAAKVTAVKPQVQNQGFTLVKVTSMFAGETKTVAMYDTKNGDPETKPVDFKDATVRSKASFEVTFKDNTKRTFTVDVKAVGGGEVEGVNQKTIKVSKEIKFGTKGKVTVTTNTEGLVIKNVNSDNTIDFDSGNSATDQFVVVATKDKIVNGKVEVKYFKNASDTTPTSTNVKADATPVGLDIVAPSEIDVNAPNTASTADVDFINFESVEIYTLDSNGNRLKKVTPTATTLVGTSSSTVNVDVTAEFIAVSKAAKNDGYLYNKPLVTVKDASGEDEEQAGLAKKFSDVHFDVDFSL-----ANVVKTGSGTVSSSPSLSDAIQLTNSGDAVSFTLVIKLLAAPVSVNVTVTKGS | |||||||||||||
10 | 4q35A | 0.10 | 0.09 | 3.26 | 1.03 | SAM | ----RQGRGKADLMKQRGNYTILDNGSFTSCLPGSDTWSVVGSEIIHDR----EQVAEIWNARFKVGPVPIFYSPYLQLPV-GDKRRSGFLIPNAKYTTT--NYFEFYLPYYWNIAPNMDATITPHYMHRRGIMWENEFSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPGSSTDGYATQKFSVGYAVQ-N--FNATVSTKQFQVFSEQ--NTSSYSAEPQLDVNYYQNDVG--PFDTRIYGQAVHFVNTRM-------------PEATRVHLEPTINLPLSNNWGSINTE----------------------AKFLATHYQQTNLDERFNISVGQIYYFTESRTGDDNDRLVQLNYHYASPEYIQA--EQYKNGISQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNAIGFNIELRGLS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |