Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | VKLTTHPSNFGVDPEPLDWGNRDPKKRGPVVATVSKPGMRNAIGAHSGTYCVYRAVALAVQSAPADFRPDFTNTLPPVKIGPFESWFDTSKIASLDPWGHVPQSIFGDRLANGTLDIRPTISVTKSHLELPELQLAVKNGTLKKDGTVIVDTVGAFESSVVVTKAAVEPVWYLPEVARRFKCDEMQLRRTLYEQ |
1 | 3bohA | 0.15 | 0.13 | 4.35 | 0.65 | SPARKS-K | | ALQERGWQAEIVTEFSLLNEMVDVDPQGILKGRGSDNTQFCGPKMPGGIY----AIAHNRGVTTLEGLKQITKEKGHV------------PSVHGDHSSDMLGCGFFKLWVTGRFDYP------RPQFDADQGAKAVENAGGV---IEMHHGSHAEKVVYINLVKTLEPQRFIGWAAGKFGLDPKFLIAAAATV |
2 | 3lk7A3 | 0.14 | 0.10 | 3.53 | 0.47 | FFAS-3D | | -----------------------LVSESQLIG---------ITGSNGKTTTTTIAEVLNAGGQRGLLAGNIGFP------ASEVVQAANDKDTLVELSSFQL----------GVKEFRPHIAVLPTHLSFEDYVAAKWNINQSSSDFLVLNFNQGKTTKATIVPFSTTEKVDVPGVAKLAGISNQVIRETLSN- |
3 | 5xtbM | 0.15 | 0.12 | 3.99 | 0.38 | HHpred | | --------GVEEADVVLLVGT-NPRFEAPLFNARIGSPAKKPALQRNDGAAILASIAQKIRMTNILHKPGVEAINPLFLLGADGGLPKDCFIIYQGHHG--------------------DVGAPIADVILPGA------AYTEKSATYVNTE-----GRAQQTKVAVTPPKIIRALSEIAGMTLDQVRNRLEEV |
4 | 4kd5C | 0.17 | 0.15 | 4.94 | 0.66 | MUSTER | | LNISAAASLK--EAAKI---EEEYKKVDSLTVNYGASGQGAFISAGQKQ-----KVLDEEKLLVSDTKDLVKNDLSADS--S-VSGKDVKKIAVGEAESVPAGKYADEVLTNLNLKLKDKLVFAK---DVKEVLAWVQSGNADNDKIKVVEKTDEKTHSPITYPVSVIK--KNVDAAKKF-LLSESGQKIFEEF |
5 | 1a4zA | 0.07 | 0.05 | 1.88 | 0.77 | CNFpred | | ----------------------------GVCGQIIP----WNFPLLMQAWKLGPALATGN-----------------------------VVVMKVAEQTPLTALYVANLIKEAGFP-PGVVNVIPG--FGPTAGAAIASH---VDKVAFTGST-SNLKRVTLEIGGKSPNIIMSDA-----DMDWAVEQAHFAL |
6 | 3by6E | 0.12 | 0.04 | 1.27 | 0.40 | HHsearch-2 | | ----------------------------------------------------------------------------------------------------------------QAMAITQKRP--VYLQLVDRIKNEVATDVLSANDQLPSVR----------------------ETALQEKINPNTVAKAYKEL |
7 | 2wtbA2 | 0.09 | 0.08 | 3.20 | 0.56 | Neff-PPAS | | LIHVFFSQRGTAKVPGVTDRGLVPRKIGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRSQEKFEKTMSLLKGSLDYESFRDVIEAVIENISLKQQIFADLEKYCPQ-HCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTHTSAQVIVDLLDVGKKIKKTPVVVGN----- |
8 | 2hs5A1 | 0.10 | 0.03 | 0.94 | 0.38 | HHsearch | | --------------------------------------------------------------------------------------------------------------------------TSRTTRVAGILRDAIIDGTFRPGARLSEP-----------------------DICAALDVSRNTVREAFQI- |
9 | 5a3jA | 0.16 | 0.13 | 4.29 | 0.74 | SP3 | | LK----LDGTGKKANILVTAASGAKLANAHVTATCGARNIEFVKSLGADEVLYKTPEGAALKSPSGKKYDAVHCANGIPFSVFEPNLSENKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAE-NLEFMVNLVKEGKVKT--VIDSKIDGHATG-----KIIVEP------------------------- |
10 | 4ombA | 0.08 | 0.08 | 3.21 | 0.71 | PROSPECTOR2 | | AIDPALPEYQKASGVSGNVGSDTLARLYPIQIQAAGSTEGTGPMSRKMKDVELQAFEQKYGYSATRLCGSKQDVKTWGDLGLTGDWAKKPVQLFGRNSVSGTYGYFKEEALCKGDFRPNVNEQP----GSASVVQSVSQSLNKTASALAKKEGAAFVEDSRFLYVYVAPNKPLDPLEAQFPLPAKVAEKAIKEG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|