Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LTPDGKLTAKNADISGSVNANSGTLSNVTIAENCTINGTLRAEKIVGDIVKAASAAFPRQRESSVDWPSGTRTVTVTDDHPFDRQIVVLPLTFRGSKRTVSGRTTYSMCYLKVLMNGAVIYDGAANEAVQVFSRIVDMPAGR |
1 | 6beaA3 | 0.12 | 0.11 | 3.75 | 0.77 | SPARKS-K | | NLLQGGDATDNITLADS-NIINGGIETIVTAGNKT--GIHTVNNIKGSVIGA----------ANNKQ-TIYASASAQGAGSATQNLNLSVADVLALSESENSASTTTNVNMNVARSYWEAYTFNSGDK-AGSDLDINLSDSS |
2 | 3afgA2 | 0.16 | 0.11 | 3.53 | 0.54 | FFAS-3D | | ------------TFTGYVSNKGSQSHQFTISGAGFVTATLYWDNSGSDLDLYLYDPNGNQVDYSYTAYYGFEKVGYYNPTAGTWTIKVVSYS------------GSANYQVDVVSDGSLG---------------------- |
3 | 2n3dA | 0.19 | 0.11 | 3.40 | 0.49 | HHpred | | VTGEGELQI-DGVVKGDVRV-----GRLTVGETGHVEGSVYAEAVVGAITSK-QVRLY-----GTSYVDGDIQLAMETGAFFQGRSLKFQ---------------------------------------------------- |
4 | 2vo8A | 0.09 | 0.08 | 2.98 | 0.80 | MUSTER | | ------TTVGNSTIKVNDEVQVGAFEAILGIEGLNGDTEVYSAEYL-EAFILNEITSFNDSLFSKEVEPGKVRILVASGNEIEKDSDLVKVNLTPKISSELEVLGLTTALVGAG-DGNTHDLEL-------SSKEVKINEE- |
5 | 3lycA | 0.12 | 0.11 | 3.96 | 1.11 | CNFpred | | PLQAEEFEAGL-AGSGIIQFHDASFTNLKIEISGDFVGKVYCEELNGDMAGSNTIVLGG--------TVGIAEFSIAGSGTVRFDCTMDELECKIAGSGDIEAFVVNKIKAEIAGSGSVKYKGDPIQKKVMGSGKIEKVE-- |
6 | 2n3dA | 0.22 | 0.13 | 4.00 | 0.71 | HHsearch-2 | | VTGEGELQI-DGVVKGDVRV-----GRLTVGETGHVEGSVYAEAVVGAITSK--------------------QVRLYGTSYVDGDITHEQLAMETGA----------------FFQGRSLKFQR------------------ |
7 | 5w5pA4 | 0.12 | 0.11 | 4.00 | 0.87 | Neff-PPAS | | ---DGSPAVNVIRCDGNLWESSGVFAKLGAVYAGTFIGNYFEGNNTGDLPTLKCLIELGKTGTTGYSSGVTFINQFGAAAAYKADVNYADVKFTASLSGTNLDVLAPPTFVGNWTNAYRWSEGQVVT---QFGNAFSGGNAR |
8 | 2n3dA | 0.23 | 0.13 | 4.19 | 0.74 | HHsearch | | VTGEGELQI-DGVVKGDVRV--G---RLTVGETGHVEGSVYAEAVVGAITSK--------------------QVRLYGTSYVDGDITHEQLAMETGA----------------FFQGRSLKFQR------------------ |
9 | 4ld1A | 0.12 | 0.11 | 3.71 | 0.69 | SP3 | | -LPDGGRLVVFPN--GTRKELSGQTV-KVMFFN-------------GDVKHTVIYYYAEAQTTHITYPDGMEVLQFPNNQ---TEKHFPRKEITQTVKTLHPDGREESVIIQLNPDGSKVIQFNTADFKRRETVKTVYSDGR |
10 | 5ny0A2 | 0.13 | 0.13 | 4.41 | 0.64 | PROSPECTOR2 | | VADNANIALENTKIDIWMIADIGIHPHLTIGNNATL--TMENGNIKLDGDTSNSFTVGEGSTVKLSAKVDNVRILPYEDSNTANVSFAKGSDVTLHAGTGSNLRMGASISNQIDFNGKATFIKDSEFDYYWNDQQKTGSTGY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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