Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | DNREIFGYKTQGCRRAMCIAGYIFSCGALLLLFYWKPAWDVWANCIPCNLQEADVILLRTTDEFQKYTRKKVTWIDLSTMNLSVRDSSDSLFVADKDSVINRAIMKPELKVRSIQVQKIRYIWD |
1 | 5xwpA1 | 0.06 | 0.06 | 2.74 | 0.81 | SPARKS-K | | EYTHLKNKVEFNELNLLQGLLLRILHRLVGYTSIWERDLRFRLKGEFPENQYIEEIFNFENKKNVKYKGGQIVEKYIKFYKELHQNDEVKINKYSSANIKVLKQEKKDLYIANYIFNYIPHAEI |
2 | 1wruA4 | 0.13 | 0.07 | 2.50 | 0.34 | FFAS-3D | | -EAEIDGWTRK-------------------DGQLWMPNLLVTIDASKYAIKTTELLVVTLILNDQDGLKTRVSLAPREGFLVPVESD------------------------------------- |
3 | 4mk6A2 | 0.14 | 0.04 | 1.39 | 0.23 | HHpred | | ---------ATVNEADRVFYAEFFSYGCSGVLIKWITRGF------KEAPET------------------------------------------------------------------------ |
4 | 5njlA3 | 0.11 | 0.10 | 3.47 | 0.97 | MUSTER | | ---ATEKYENSADLSAEANSITEKAKTETNGIYK---VADVKASYDSAK----DKLVITLRDKTDTVT-SKTIEIGIGDEKIDLTANPVDSTGTNLDPSTEGFRVNKIVKLGVAGAK------- |
5 | 4r40A | 0.10 | 0.08 | 2.95 | 0.49 | CNFpred | | SILAQNQYKVT---QWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKT-KFPHELRVSDYDGYNQFVVHRSPEPLMSPAWS------------------------DGSKIAYVTFESALVIQT |
6 | 3bz2T | 0.07 | 0.02 | 0.68 | 0.44 | HHsearch-2 | | ------------METITYVFIFACIIALFFFFFREPPRITKK---------------------------------------------------------------------------------- |
7 | 5w7kA2 | 0.05 | 0.05 | 2.27 | 0.82 | Neff-PPAS | | -TLTISTWQKTEWLGVLEAAVKTIPTRLPFPTTKEFMSCMNPGWDDENYVRGRVHVYSTTISKEFQISTADLYKIAAPVIPIIVSKWWTTEQKEAEATYGETGLVPQKWTAVFAKGEKEK---- |
8 | 3jcuT | 0.07 | 0.02 | 0.66 | 0.29 | HHsearch | | ------------MEALVYTFLLVSTLGIIFFAIFFPPKIS------------------------------------------------------------------------------------ |
9 | 3oj0A | 0.08 | 0.06 | 2.23 | 0.66 | SP3 | | PQYKVTVAGRNHVRAFAEKYE---------------------YEYVLINIKNNDVIITATSSKTPIVEERSLPLFIDLGNPPNIERGNNVITLDEIYEISKKNELREEK--------------- |
10 | 2va0A | 0.12 | 0.09 | 3.15 | 0.47 | PROSPECTOR2 | | S----------PAKRLLFQMVGNAINRNTQQLTQDLRAM---------PNWSLRFVYIVDRNNQ-----------DLLKRPLPPGIMVLAPRLTAKHPYDKVQDRNRKLYGRHITLNDVVTISA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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