Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | KENDTKDRKPKKTNVSRIEYSSENFTKYKKRRYEMVLQAKLPEFKCSIPCLIDTGAQVNVITEETVRAHKLPTRPWLQSVIYGGVYPTKINRKTTKLIINLNGISIKTEFLVVKKFSHPAAISFTTLYDNNIEISSS |
1 | 5yq8A | 0.18 | 0.14 | 4.52 | 1.67 | SPARKS-K | | ---------------------------AKVTML--YVPCTINQV--LVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLK |
2 | 3s8iA | 0.11 | 0.08 | 2.89 | 0.97 | FFAS-3D | | ----------------------------------LYINCKVNGHP--LKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGQ--RIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLK |
3 | 3s8iA | 0.12 | 0.09 | 3.09 | 1.44 | HHpred | | --------------------------------TMLYINCKVNG--HPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAVAKG--Q-RIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLK |
4 | 5yq8A | 0.17 | 0.13 | 4.32 | 1.67 | MUSTER | | -----------------------------AKVTMLYVPCTINQ--VLVKAFVDSGAQNSIMNKRTAERCGLMLVDVRMRGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLK |
5 | 4rghA | 0.14 | 0.10 | 3.50 | 1.84 | CNFpred | | ----------------------------------LYINCKVN--GHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRAGIAKGVGTQKIIGRVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLK |
6 | 3s8iA | 0.12 | 0.09 | 3.10 | 1.93 | HHsearch-2 | | -------------------------------VTMLYINCKVNG--HPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAVAKG--QRIIG-RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLK |
7 | 5yq8A | 0.17 | 0.13 | 4.31 | 2.32 | Neff-PPAS | | ------------------------------KVTMLYVPCTINQ--VLVKAFVDSGAQNSIMNKRTAERCGLMLVDVRMRGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIDLK |
8 | 3s8iA | 0.12 | 0.09 | 3.09 | 2.52 | HHsearch | | -------------------------------VTMLYINCKVNG--HPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAVAKG--QRIIG-RVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDL- |
9 | 5yq8A | 0.17 | 0.13 | 4.32 | 1.07 | PROSPECTOR2 | | AKVTM-----------------------------LYVPCTINQ--VLVKAFVDSGAQNSIMNKRTAERCGLMLVDVRMRGVAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMIALA |
10 | 5yq8A | 0.18 | 0.13 | 4.27 | 0.97 | SAM | | ----------------------------------LYVPCTINQ--VLVKAFVDSGAQNSIMNKRTAERCGLMRLVDVRMRGAVGVGRQEICGRIHMTPVNLAGMYIPFAFYVIEDQAMDLIIGLDQLKRHQMMID-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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