Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | MSRLLSTKPSSIISTKTFITQNWNSRRRHRCKSRMNKTYCKGARRSQRSSKENFVPCSEPVKETGALRDCKNILDVSCHKTGLKLEKAFLEVNKPQIHKLDPSWKELKVTPSKYS |
1 | 3hgfC | 0.08 | 0.06 | 2.40 | 1.10 | SPARKS-K | | -------------------------KKIENIVTKIDKKK-YIYKKLLNEIAEIEKDKTSLEEVKNINMSYGKSLNKLFLEKIKKKSENMIKSMEKYIKDLDEIKEQSPKAEMN-- |
2 | 6r24A | 0.05 | 0.05 | 2.41 | 1.08 | Neff-PPAS | | CRRHLLNPANDFVQEQGILEITFDTFIQGLYQHFYKPPDINKIFNAITQLSEAKLGIERLNQRFRKIWDRMPPDFMTEKAAIMTYTRLLTKETYNIVRMHKPTLKDAMEEAYQTT |
3 | 6cb1Z | 0.14 | 0.13 | 4.46 | 1.03 | SPARKS-K | | ---AKFLKAGKVAVVKVVIVKPHDEGERYPLKKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTL---DVEAFKSVV-STETFEQPSQREEAKKVVKKAFEERHQAGKNFFSKLR |
4 | 4ywsA1 | 0.13 | 0.10 | 3.63 | 0.31 | FFAS-3D | | --EVLDSRGNPTIEVDVRLE-----------SGDVGRAIVPSGSTGAHEALELRDGDKSRYNGKGVLKAVQAVNE--------DIAEALIGFDAADQIALDQELIALDGTPNKSK |
5 | 4apmA2 | 0.17 | 0.12 | 3.99 | 0.29 | HHpred | | LCRVIEETPNCLIIDAGSFAMTAVG-----------------------SPLEVPFPCDIVTNIEPRPRSRHIFVTTALSREALKCSKYVHEKYSESCGEEKPSS----------- |
6 | 2w0cT | 0.13 | 0.13 | 4.52 | 0.97 | MUSTER | | MANFLTKNFVWILAVGVWFYQKADNAAKTATKPIADQFLVNGSNYVKFPNAGFVLTRDALQDDFIAYDDRIKLGTHDRHKDFLAEILDHERRVKPVYRKLNIDASTIRAASGVEL |
7 | 1vkjA | 0.00 | 0.00 | 0.21 | 0.31 | CNFpred | | ---------RLLLILRDPSERVLSDYTQVLYNH---------------------------------------------------------------------------------- |
8 | 3zldA | 0.10 | 0.06 | 2.25 | 0.48 | HHsearch-2 | | ICAIFDQVPDCFAPITGAVAYT-----------------------ALGSSTEVNLPQCDSASFIPIEGPCN-----NCVQVVTECVGNQFDQTSKACC----------------- |
9 | 4b03D | 0.12 | 0.12 | 4.27 | 1.02 | Neff-PPAS | | AMDLGELCEDTMTYKCPRITETEPDDVDCWCNAWVTYGTCSQTGEHRRDKRSVALA--PHVGLGLETRTETWMSSEGAWKQIQKVETWALGHPGFTVIALFLAHAIGTSITQKGI |
10 | 1nw3A3 | 0.28 | 0.15 | 4.52 | 0.40 | HHsearch | | KERFANMKEGGIVSSKPFAPLNFR----------INS---------------------------RNLSDIGTIMRVVELSP--------L--------KGSVSWTGKPVSYYLH- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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