Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | SIVNDPRHSVSNSARRLEVLRNCINCIFENKIADARKTFPAVLRALKSRAARLALCTELARHVQGNNAMLEHQQFDLVVRLMNCALQDGSSMDEYGVAAALLPLSTAFCRKLCTGVIQFAYTCIQEHAVWQNQQFWEAAYYQDVQRDIKALYLEPHNNPAHTPQSPRDGGREFVWRESRGRGNAHSRSQEPTALEIAAEQMRKWPSIDADKQKELTNSEESTLYSQAIHYANRM |
1 | 3gs3A | 0.09 | 0.08 | 2.97 | 1.02 | FFAS-3D | | -----NELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLASNMEVRKQVVAFVEQ--------VCKVKVELLPHVINV-VSMLLRDNSAQVIKRVIQACGSIYKN--------GLQYLCSLMEPSAEQAWNIL--SLIKAQILDMIDNENDGISFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFTHISSVNLIACTSS-LCTIAKMRPIFMGAV |
2 | 2pffB | 0.13 | 0.13 | 4.56 | 1.08 | HHsearch-2 | | KILPEPTEADDEPTTPAELVGKFLGYVSSLVEGQFDQVLNLCLTELTLVKTKELIKNYITARIMANSALFRAVQLVAITDDYFEELRDLYQTYHVLVGDLIKFSAETLLIRTLDAEKVFTQGNILENTPDKDYGVIQLAHYVVTAK---LLGFTPGELRSYLKGATGHSQGTDSWESFRCYEAYPNTSLPPSILEDSLENNESISNLTQEQVQDYVNKTNSHLPAQVISLVNGA |
3 | 5cwfA | 0.11 | 0.08 | 2.91 | 0.83 | SPARKS-K | | --------MSDEMKKVMEALKKAVELAKKNNDDEVAREIERAAKEIVEAKVMLALAKAVLLAAKNN----DDEVAREIARAAAEIVEALRENNSDEMAKVMLALAKAVLLAAKNN-----------------DDEVAREIARAAAEIVEALRENNSD------------------------------EMAKKMLELAKRVLDAAKNNDDETAREIARQAAEEVEAD-------- |
4 | 5hb4B3 | 0.10 | 0.09 | 3.17 | 0.91 | FFAS-3D | | ---------IPRCMEAMKGVRSMLQCMADT----LDFSRLSLVEQ------HECLASILHAAVQRHH--ATIADFQDFIKILRKW-----DKYDHFLIHLIPVLAAYITEFGSPEGMGDLNDFICKGGDWALPVLWTKQFLDALKDFILSVAADCKAQEWQDPSQLGARQW---LQRKIPSLPSEPFPFSHFLQHSLMVHLEGFVSNLPDVLRKLRTEEDEQRFLIIISYA--- |
5 | 6gmhQ | 0.14 | 0.12 | 3.95 | 0.30 | HHpred | | ------------QDRALAI----YKQVLRNDAKYAANGIGAVLAHKYFREARDVFAQVREATADIAHIYVEQKQYISAVQMYENCLRKFYKHQNTE---VVLYLARALFKCGKQECKQTLLKARHVAVLMFNVALVLQRLATSVLKD-EKSNLKEV--LNAVKHRYFSYL---SKLA--LAATEARQC--SDLLSQAQYHVARARKQDEEERELRAKQEQEKLLR--------- |
6 | 5cwpA | 0.12 | 0.12 | 4.04 | 0.82 | MUSTER | | -----MSSDEEEARELIERAKEAAERAQE---AAERTGDPRVRELAREKRLAQEAAEEVKRDPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVE---------AAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSEEVNEAAIQEAVESLREAEESGDPEKREKARERVREAVERAEEVQRDP |
7 | 4hb2C | 0.13 | 0.10 | 3.42 | 0.79 | CNFpred | | -------------IQLYKSEREVLVYLTHLNVIDTEEIMISKLARQISWHNINTLSWAIGSIS---GTMSEDTEKRFVVTVIKDLLDLCVKKNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEF-HEGVQDMATFIKIVQKCKYHFVI------------------------------QQPRESEPFIQTIIRDIQKT-------TADLQPQQVHTFYKACGIIISEE |
8 | 2pffB | 0.12 | 0.12 | 4.08 | 0.94 | HHsearch-2 | | AYSTRPLTLSHGSLEHVLLVPTAS-FFIASQLQEQNKILPEPTEADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLGNDIH------ALAAKLLQENDTLIKNYITARIMAKRPFDNSALFRGDLIKFSAETLSEL-IRTTLDAEKFTQLNINPSNTPDKLLPELRSYLKGATGHSQGLVTAIAETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTS |
9 | 5nnvA | 0.09 | 0.09 | 3.38 | 0.93 | Neff-PPAS | | EEELAESSAISAKEAKIEDTRDKIQALDE-SVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQ--------LSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKESFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTL |
10 | 3tjzB1 | 0.12 | 0.05 | 1.81 | 0.36 | HHsearch | | QHLERVNETPINPRKCAHILTKILYLINQGETTEATEAFFAMTKLFNDPTLRRMCYLTIKEMS-C-IA-------EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT------------------------------------------------------------------------------------------------------------------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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