>PF12294 (301 residues) RIALHFHPDRLDSNMKSVAEALFEQGVYKSQFETLLSNGSVSAYPGGERDLWEKRIFGGA YQLEGVTNNQRPKYGALNLMLHPDGPAPRFGSCYFLLSPKVSSRSTYTYLDSHQDPKEKG TYEEFDMILAALLEETFVRDFAIGEGNLTPTILINHLLANLKRPFIDVVSKEPARNLNHY IEAQIHGEISLKEDVEALVADPSFKGTDVGRVLEEICLKYAIDLYWHIGFVLAVDEVPMD FRGSKMPSLARRIARNHCIDANIIGSAVADLKRNPLSWSDRGTYEEVLQELKLLWHVLVR F |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RIALHFHPDRLDSNMKSVAEALFEQGVYKSQFETLLSNGSVSAYPGGERDLWEKRIFGGAYQLEGVTNNQRPKYGALNLMLHPDGPAPRFGSCYFLLSPKVSSRSTYTYLDSHQDPKEKGTYEEFDMILAALLEETFVRDFAIGEGNLTPTILINHLLANLKRPFIDVVSKEPARNLNHYIEAQIHGEISLKEDVEALVADPSFKGTDVGRVLEEICLKYAIDLYWHIGFVLAVDEVPMDFRGSKMPSLARRIARNHCIDANIIGSAVADLKRNPLSWSDRGTYEEVLQELKLLWHVLVRF | |||||||||||||||||||
1 | 2gwnA | 0.12 | 0.11 | 3.87 | 0.58 | SPARKS-K | CIDDQVHFREPGLTHASESRAAVAGG------VTSFDPNTNPPTTWERLLEKRQIGADTAW----------ANYGFFFGGTNDNVDKHLVPGLLFLGSSTVDNLLIATHCEKEEIIRANLDIHFHPLIRSEACYRSSAEAVELAERNARTEKELSLF-----------RNDIPTAQKRITSEVCVHHLWFSDTDYNRIKWNPAIKKESDREALRAAVRNGRIDIIATDHAPHLLREKEGSCLVQHSLLALLELCNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPH | |||||||||||||
2 | 3gehA | 0.12 | 0.11 | 3.86 | 0.57 | FFAS-3D | -VEFHCH------GGIIAVQQVLQ---------LCLESGARLAQPG---EFTLRAFLNGRLDGARSPQAAQ------TALAGLQGKLAH---PIRQLRANCLDILAEIFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVQVLDQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEQKQGIDSLETAILEMDLAIAAALTQAKMSLEQVQATITQQLPLDFWTIDLRGAIQALGE- | |||||||||||||
3 | 3zm8A | 0.14 | 0.10 | 3.53 | 0.40 | HHpred | ----------------------AEDAILTGTAQVGYTGRGVTGFDGSDKITFQISSATKLYDLSIAAI-YGDKRTNVVLNNGAVSEGDSFTSVQVLLNAGQ---NTIDIVNNWGNLNNPNADTNAKKLYSYL-RSVYGNKIISGQQELHHAEWIRQQTGK-TPALMDYSPSIAHHNAGGIVSVLWHWNAGFDFDIAATLANP---QGAIAVQLKR-LEAAGVPVLWRPL------------------------------------------HEAEGGWFWWGA--KGPEPAKQLWDILYER | |||||||||||||
4 | 1nfgA | 0.12 | 0.11 | 3.76 | 0.62 | MUSTER | -IDVHTHVETVSFNTATATVAAACGG-TTTIVDF------CQQDRGHSLAEAVAKWDGMAGGKSAID------YGYHIIVLDPTDSVIE------ELEVLPDLGITFVFMAYRGMNMI-------DVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEA-TARALALAEIVNAIYIVHV--TCEESLEEVMRAKSRGVRALAETYLYLTKEDLERPARAKKDHDVLWNALRNGVFE--TVSFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEG | |||||||||||||
5 | 5x3vA | 0.11 | 0.09 | 3.24 | 0.68 | CNFpred | RLIIAGTSAYARLIDYARMREVCDEVKAHLLADMA---------------HISGLVAAKVIPSP-----KHADIVTTTTHKT--LRGARSGLIFYRKGYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSL------QVLKNARAMADALL-----------------ERGYSLVSGGTD---NHLVLVDLRPK-GLDGARAERVLELVSITANKNTGLRLGAPALTRQFREDDFRRVVDFIDE-----GVNIGLEVKSKTAKLQDFKSFLLDSETSQRLANLRQRVEQF | |||||||||||||
6 | 1vt4I3 | 0.18 | 0.08 | 2.71 | 0.71 | HHsearch-2 | --------------------------------------------------------------------------------------------EYALHRSIVDHYNIPKTFDSDDLPPYL--DQYFYSHIGHHLKNIPERMTLFRMVFLD----FRFLEQKIRH---DSTANASGSILN---------TLQQL---KFYKPYICDNDPKYERLVNAILPKIEENLICS-----------------KYTDLLR-IALMAEDE------------------------AIFEEAHKQV----QRG | |||||||||||||
7 | 5ugqA | 0.10 | 0.10 | 3.57 | 0.69 | Neff-PPAS | IGSLVINPGGPGESGIEAALGVFQTLRVHERFDLASSRPAIWCNSDADNDRLRAEPQVDYSREGVAHIENETKQFVGRCVDKGKNFLAHVGSAYAEEFPQRVRAILDGAVDPNADEAELRQAKGFQDAFNNYAADCAKNGCPLGADPAKAVEVYHSLVDPLVDPDNPRISRPARTKDPRG--------LSYSDAIVGTIALYSPNLWQHLTDGLSELVDNRGDTLLALADYRRDSHGRYNNSGDARVAINCVDQPPVTDRDKVIDEDRRAREIAPFSYGKFTGDAPLGTCAFWPVPPTSQP | |||||||||||||
8 | 1y0zB3 | 0.12 | 0.02 | 0.70 | 0.31 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------RVLGEDD---------------DPSS-PIGRSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTV------------------------------------------------------------------ | |||||||||||||
9 | 3w6sA | 0.12 | 0.08 | 2.70 | 0.74 | SP3 | -------------------------------------------------------------SIEWKLTAN--------LRNGPTFFQPL---------ADSIEPLQFKLIGSDTFDTKYIPDSLINYLFKLFNLEIESGKTYPQLHSLTKQGFLNYWFHSFAVLQTDEKFIQDNQDWNS----VLLGTFYIKPNNAGFLVNGAHRGYRLAQVYLNWAPLLGYK-------YSIFNLVFVTN------QASWKIWDKNF---QRIGLVPHAGILNFSEPVDTKIEPEFLSME---------- | |||||||||||||
10 | 5gl5A | 0.09 | 0.09 | 3.26 | 0.84 | PROSPECTOR2 | NVVIITHSE--------FRDFVESHGIQFEEIAGNPENESMNVKMLREASSKFRGWIDALLQTSWEVCNRRPYFRAFTMPWTRTRAYPHAFI---------------VPDQKRGGNYNYLTHVLFENVFWKGISGQVNKWRVETLGLGKTNLFLLQQNNVPFLYNVSPTIFPPSIDFSEWVRVDDKSTFKPPAELQEFISEARSKGKEMTEALVEAVMEADVYCILNKGWSERLGKKTEVDLPRNIFFYAGRVEDIGVLNAQTLADALKVATTNKIKISKEDGIKTAISAIYNELEYARVK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |