>PF12048 (321 residues) LLPLLLAAAFLPPAFVQAEEEAAKDQPPAPVERPAVSERSQDEAKGLERQLPEDGQQILK AGDESFLTLWLPANTAEAEGVVILVPGDGESPDWPQAIGPLRRKLPDAGWQTLSLALPDP QSTAPVTRPAESAASAADSASKPDVKGESGNAPAPESTAEAGSGEPAQSEDQAPPPAIDP VEQRKAHAERVMARLQASIDLALQHEPKSVVLLGHGTGAYWAARYLAEKEPAEIHNLLLV AAEVPRDFRPALEDMVPKLKLATGDFYYRDARADREAARLRMQAGKRQKHPAYVQIAMQA LPADPKAEQEQLYRRIRGWLS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LLPLLLAAAFLPPAFVQAEEEAAKDQPPAPVERPAVSERSQDEAKGLERQLPEDGQQILKAGDESFLTLWLPANTAEAEGVVILVPGDGESPDWPQAIGPLRRKLPDAGWQTLSLALPDPQSTAPVTRPAESAASAADSASKPDVKGESGNAPAPESTAEAGSGEPAQSEDQAPPPAIDPVEQRKAHAERVMARLQASIDLALQHEPKSVVLLGHGTGAYWAARYLAEKEPAEIHNLLLVAAEVPRDFRPALEDMVPKLKLATGDFYYRDARADREAARLRMQAGKRQKHPAYVQIAMQALPADPKAEQEQLYRRIRGWLS | |||||||||||||||||||
1 | 4zi5A | 0.10 | 0.07 | 2.43 | 1.38 | SPARKS-K | -------------------------------------------------GAMTARKVDYTDGATRCIGEFHWDEGKSGRPGVVVFPEAFGLN---DHAKERARRLADLGFAALAADMHGDAQVFDAASLSSTIQGYYGD------------------------------------------------RAHWRRRAQAALDALTAQPESKVAAIGFCFGGATCLELARTGA--PLTAIVTFHGGLLPEMA----GDAGRIQSSVLVCHGADDPLVQETMKAVMDEFRRDKVD-WQVLYLGNAVHSFTDPEARSWTAMCNLFS | |||||||||||||
2 | 2o2gA | 0.17 | 0.11 | 3.47 | 1.38 | FFAS-3D | ---------------------------------------------------PQEYAVSVSVGEVKLKGLVIP---NGATGIVLFAHGSGSSRYS-PRNRYVAEVLQQAGLATLLIDLLT------------------------------------------------------------QEEEEIDLRTLLASRLVGATDWLTHNPHLKVGYFGASTGGGAALVAAAERPE--TVQAVVSRGGRPDLAPSALPH----VKAPTLLIVGGYDLPVIAN-----EDALEQLQTSKRLVIIPRASHLFEGALTAVAQLASEWFH | |||||||||||||
3 | 2wtnB | 0.13 | 0.08 | 2.91 | 2.31 | HHpred | ------------------------------------------------------GAMYIDCDGIKLNAYLMPKNNPEKCPLCIIIHGFTGHSEER-HIVAVQETLNEIGVATLRADMYGHGKSDGKFE-------------------------DH-------------------------------TLFKWLTNILAVVDYAKKLDVTDIYMAGHSQGGLSVMLAAAMER-DIIKALIPLSPAAMIPETIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQ----YKNCKLVTIPGDTHCYDHHLELVTEAVKEFML | |||||||||||||
4 | 1qlwA | 0.13 | 0.12 | 4.08 | 1.20 | MUSTER | --------------------------VPKTPAGPLTLSGRDVTSETLSLSPKYDAHGTVTVD--QMYVRYQIPQRAKRYP-ITLIHGCCLTETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMLGSMPTPNPTVANLSKLAIK-LDGTVLLSHSQSGIYPFQTAAMNP-KGITAIVSVEPGECPK----PEDVKPLTSIPVLVVFGDHIEERLKACHAFIDALNAAGG-KGQLMSLPALGVHGNRNNLQVADLILDWIG | |||||||||||||
5 | 2o2gA | 0.15 | 0.09 | 3.16 | 1.72 | CNFpred | ---------------------------------------------------PQEYAVSVSVGEVKLKGNLVIPN--GATGIVLFAHGSGSSRYS-PRNRYVAEVLQQAGLATLLIDLLTQEEEEID----------------------------------------------------LRTRHLRFDIGLLASRLVGATDWLTHNPHLKVGYFGASTGGGAALVAAAER-PETVQAVVSRGGRPDL-----APSALPHVKAPTLLIVGGYDLPVIAMNEDALEQLQT----SKRLVIIPRASHLFEEALTAVAQLASEWFM | |||||||||||||
6 | 3pf8A | 0.09 | 0.06 | 2.26 | 0.42 | HHsearch-2 | -----------------------------------------------NLYFQGMATITLERDGLQLVGTREEPF-GEIYDMAIIFHGFTANRNTS-LLREIANSLRDENIASVRFDFNGHGDSDGKFE-------------------------NM-------------------------------TVLNEIEDANAILNYVKTDPVRNIYLVGHSQGGVVASMLAGLYP-DLIKKVVLLAPAATLKGQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQI----YQNSTLHLIEGADHCFSDSQKNAVNLTTDFLQ | |||||||||||||
7 | 3f67A | 0.14 | 0.10 | 3.29 | 1.18 | Neff-PPAS | ---------------------------------------------------IIAGETSIPSQGENPAYHARPKNADGPLPIVIVVQEIFGVH---EHIRDLCRRLAQEGYLAIAPELY---------------------------------------------FRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHGAHRLLITGFCWGGRITWLYAAHNP--QLKAAVAWYGKLVLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETRQALRAANATAEIVVYADYRASYHEESAKDGWQRLAWFAQ | |||||||||||||
8 | 3pf8A | 0.09 | 0.06 | 2.25 | 0.66 | HHsearch | -----------------------------------------------NLYFQGMATITLERDGLQLVGTREEPF-GEIYDMAIIFHGFTANRNTS-LLREIANSLRDENIASVRFDFNGHGDSDGKFE-------------------------NM-------------------------------TVLNEIEDANAILNYVKTDPVRNIYLVGHSQGGVVASMLAGLYP-DLIKKVVLLAPAATLKGQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQI----YQNSTLHLIEGADHCFSDSQKNAVNLTTDFL- | |||||||||||||
9 | 5g59A | 0.13 | 0.10 | 3.33 | 1.80 | PROSPECTOR2 | HHHHHHGYKMV-----------------NPPRVVGNWT--------PKDLSFEYKDVEITTDNVKLSGWWIDN---GSDKTVIPLHGYTSSRWAEHYMRPVIEFLLKEGYNVLAFDFRAHGKSGGKYTTVGDK---------------------------------------------------------EILDLKAGVKWLKDNYSKRIGVIGFSMGALVAIRGLSEVK--EICCGVADSPPIYLGRPINVLNYTNSIKKPLFLIIGRRDTLVKVEEVQEFYERNKHVNPNVELWVTDA-PHVRTIQPEEWKSRVGEFLG | |||||||||||||
10 | 3mveA | 0.13 | 0.09 | 3.02 | 2.43 | SAM | ---------------------------------------NSAYLEAAKKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTD--MWRLFRDHLAKHDIAMLTVDMPSVGYSSKYP------------------------------------------------------------TEDYSRLHQAVLNELFSIDHHRVGLIGFRFGGNAMVRLSFLEQ-EKIKACVILGAPIHDIF-LKVQGFLSKTKVPILAMSLEGDPVSPYSDNQMVAFFS----TYGKAKKISSKTITQG--YEQSLDLAIKWLE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |