Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | RVETDIAVQRDLRAMGDSHNPNDPYFAAFKQKMLKQYGVSRVEDLPVNYRGLLAIEGEKLTSSLFDRYADQAFGAMAAQGRVMDALAVVSPTIAIRRLSMTLAETDLSAYRRFLEQAETYRYDLVQRLNRLQATAVTAEDDAAKSKSAAAEARSRISADHWRSMPHFTP |
1 | 5cwjA | 0.12 | 0.11 | 3.95 | 0.87 | SPARKS-K | | SEEEQERIRRILKEARKSGT--EESLRQAIEDVAQLAKSQDSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEASEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEAPRVLEEAIRVIRQIAEESGSEEARRQAERAEEEIRRRAQ------------- |
2 | 1us7B | 0.17 | 0.14 | 4.67 | 0.94 | FFAS-3D | | -----------------------KTFVEKYEKQIKHFGLRRWDDLSDNVHLVCEETANYLVIWCIDLEVCALMEQVAHQTIVMQFILELAPRACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKR--LGPGGLDPVEVYESLPE--- |
3 | 3mfqA | 0.12 | 0.09 | 3.36 | 0.32 | HHpred | | ------------PAGEDPHLAKSSDLSKLQKADLVLYHG-----LHF----------EGKMVEALEKTGVAVSKNFNDGEEIVDPHFWFSIPLYVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSIPK-ESRYVPDAFVSTDSEVANSDMIET----- |
4 | 2w53A2 | 0.11 | 0.09 | 3.39 | 0.74 | MUSTER | | HLPFMQELERTS---TDQRDTPVHDLRAVMIHSFIEL-SEDERL----RKTMEIMLRTEMQQAGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATVLG--VLHGAMVEPELMDLKRDGMLALDMTLAAYVKDGVFVPGTVPEPLP------------------ |
5 | 1h2tC | 0.09 | 0.08 | 3.11 | 0.60 | CNFpred | | LEGLAGVLEADLPNY-------KSKILRLLCTVARLL----PEKLTTTLVGLLNARNYNFGGEFVEAMIRQLKESLKNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQ-VPQVRRDWYVYAFLSSLPWVGKELYEKKDA---------EMDRIFANTESYLK |
6 | 1vt4I | 0.08 | 0.08 | 3.04 | 0.83 | HHsearch-2 | | QYVFEDAFVDNFDCKDVQDMPKSISKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQQPSMMTRMYIEQRDRLYNDNQVFSRLQPYLKLRQALLVALDVCLSYKVQMDFKIFWLNL---KNCNSPETMLQKLLYQIDPNWTS |
7 | 5cwjA | 0.12 | 0.11 | 3.94 | 0.76 | Neff-PPAS | | -EEEQERIRRILKEARKSGT--EESLRQAIEDVAQLAKKSQDSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKESEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEAPRVLEEAIRVIRQIAEESGSEEARRQAERAEEEIRRRAQ------------- |
8 | 3md0A2 | 0.11 | 0.02 | 0.86 | 0.34 | HHsearch | | -------------------------------------------------------------NPTVRKVRSELERRV--------RAGELTPALAAQQILEIANLTD--------------------------------------------------------------- |
9 | 3ucxA | 0.11 | 0.10 | 3.59 | 0.69 | SP3 | | TVERLEDVAKQVTDTGRRALSDDAQVAHLVDETMKAYGMKPFANTT-----------FEHMRDAIELTVFGALRLIQGFTPALEESKNVNSMVVRHS----------QAKYGAYKMAKSALLAMSQTLATELGEKYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSD |
10 | 5h7cA3 | 0.08 | 0.08 | 3.03 | 0.73 | PROSPECTOR2 | | DSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVK-----QLEEVAKEATDKELVEHIEKILEELEQQSAFY---EILSLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKSLEA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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