>PF12030 (351 residues) VFDFMLSFVKLGRHELAAFLGHPDFLRWLLWIVLADANTEALLPNQFAKLASVISRRMPN RPPSYESIIQLLDFLLAHMRCGYTPSGQPTGVTDSTKRLDPDGGLDQPFALTKAEADLLH QMGPRTFPVNIFIDRLISIGQNPAASDSIIASLMKQSRRMENSVFRTLLHRITGQIAHNV GPYLHVASAVFCRVASDAGLISDLIKHVSQQCLILQNSEGKAFLDFMRETFDAPRERSGE TRHQVIMAGLDSVPDWAPGLLGYFDTSVIDETERFLRDKIFQPRISQSPSGNESEEDREK AEKVRQTARALGTRCLWYLRDNYVARNTEVTERSVGGLQRVIKQCSKYFNL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VFDFMLSFVKLGRHELAAFLGHPDFLRWLLWIVLADANTEALLPNQFAKLASVISRRMPNRPPSYESIIQLLDFLLAHMRCGYTPSGQPTGVTDSTKRLDPDGGLDQPFALTKAEADLLHQMGPRTFPVNIFIDRLISIGQNPAASDSIIASLMKQSRRMENSVFRTLLHRITGQIAHNVGPYLHVASAVFCRVASDAGLISDLIKHVSQQCLILQNSEGKAFLDFMRETFDAPRERSGETRHQVIMAGLDSVPDWAPGLLGYFDTSVIDETERFLRDKIFQPRISQSPSGNESEEDREKAEKVRQTARALGTRCLWYLRDNYVARNTEVTERSVGGLQRVIKQCSKYFNL | |||||||||||||||||||
1 | 5me3A1 | 0.12 | 0.11 | 3.76 | 1.15 | FFAS-3D | --FVFDQFV----TDMTTVVTLPDLILARLLKKLLSIFKHINIESVALQGIGLIGSTLFNYPEDIDGLFKAYRTCLAYCTNSVQHHTPKEMGSKLQQKFLSLIESIHAVEILPTYCSTLLTS-ELINMYEPYLKLVLSLLERRSGAIRCLALLISKDKNMLYIVKETIENRLTDSSPLVKDAILELIE--------LGSSYIDFYQHININYNDDSMLVRKHVLRMNQIIYDDTEDI--IIKAYVASRILRRIED--------EEDVIIETARSELLKRWILS---IQCPNAKPELQIKNCRVSIRVIAQLICDLFEHFLIFYVLNKNAHTEDQNKLISSSLCLLTDQV-- | |||||||||||||
2 | 4c0oA | 0.09 | 0.08 | 2.95 | 1.19 | CNFpred | ASAAAKAIHNICSVCRDHMA---QHFNGLLEIARSL-DSFLLSPEAAVGLLKGTALVLARLPLITECLSELCSVQVMALKKL-----------------------SSDPTVFLDRLAVIFRHTNP-QEIWPVLSETLNKH-IVERCCRCLRFAVRCV-ALLQPLVTQMVNVYHV---HQHSCFLYLGSILVDEYGMERQGLLDMLQALCIPTFQLHPDTVDDLFRLATRFIQRS------PVTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDF-ELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPY---TLPDVAEVLWEIMQVDRPTFCR | |||||||||||||
3 | 1vt4I3 | 0.10 | 0.07 | 2.61 | 1.00 | HHsearch | EY-----------ALHRSIVDH-YNIPKT-----FDSD---DLIPPYL----------------DQYFYSHIGHHLKNIE--------------HPERMTL---FRMVFLDFRFLEQKIRHDSTAW-NA------SGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIEELICSKYTDLL-R-IALMAEDEAIFEEAHKQV-------QRGGGGGG----------GGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGGG----------GGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGG--------GGGGGGGGGGGGGGGGGGGGGGG---- | |||||||||||||
4 | 1ejlI | 0.08 | 0.07 | 2.98 | 1.07 | PROSPECTOR2 | GTQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPSGTSEQTKAVVDAFISLLASPHAHIEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSCRNKNPAPPLDAVEQILPHHNDPEVLADAISYLTDGPNERIEMVVPQLVKLLGATELPIVTPALRAIGNI---VTGTDEQTQKVIDAALAVFPSLLTNPKTNIQKEATWTMS---NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIVYKASLNLIEKYFS | |||||||||||||
5 | 3m1iC | 0.09 | 0.09 | 3.53 | 0.87 | SPARKS-K | FLQDLAMFLTTYARNRALLESLRELLLNAHQYLIQSKIEERELFDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVEN---DEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVDTEEIMISKLARQWSWHNINTLSWAIGSISEDTEKRFVVTVIKDLLDLNKAVVASDIMYVVGQYPRFLAHWNFLRTVILKLFEFMHEVQDMACDTFIKIVQKCFVIQQPRESEPIQTIIRQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMATIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAA | |||||||||||||
6 | 5frpA2 | 0.12 | 0.09 | 3.23 | 1.12 | FFAS-3D | -RTSVMIFNKVPVTEIWKNITNKAIYTSLLHLA-REKHKEVRELNTMAKFYSNSLNEIERTYQNKEIWEIIPSTLYNLYYIN-----------------------------DLNINEQVDS---------VIFEYLLPFEPDNDKVHRLLTVLSHFDKKAFTSFFAFNARQIK--ISFAISKYIDF-----SKFSSQGPIVMNKYNQTLQWLASG-LSDSTKAIDALETIKQFNDER-------IFYLLN--------ACVTNDILTFKNCYNELVSKL-----------QTPSIMPRDIAKVIQILLFRASVSNISVL----LNLSNNSDAKQLDLKRRILDDISKVN-- | |||||||||||||
7 | 6gmhQ | 0.12 | 0.10 | 3.63 | 0.33 | HHpred | FFGLGQMYIYRGDKENASQC-----FEKVLKALYAASE--D--QEKRD-IAKGHLKKVEQYPDDVEAWIELAQ-ILEQTDIQGA-----------LSAYGTILQEQADVP--PEILNALHFRLGNLGEAKKYFLASLDRAKAEHYYNAISVTTSYLYEHEAEKLYKNILR----EHPNYVDCYLRLG-AMARDKGNF-YEASDWFKEALQINQ--DHPDAWSLIGNLHRILKQPSTQ--SD--TYSMLALGNV--WLQTLHQPTDKRHQDRALAIYKQVLRNDAKNL-----------YAANGIVLAHKREARDVFAQVREATADISIYVEQKQYISAVQMYENCLRFYKH | |||||||||||||
8 | 5mu7A | 0.12 | 0.11 | 3.90 | 0.74 | MUSTER | TMKRILTIMLNGHGLLMHIIRF--LLYFYYEIC-PKLDSQGKLKQEFILVCNGIRNDLQH---PNEYIRGNTLRFLCKL-------REPELLEPLLSSVRACLEHRHAY--VFAVASIYQHAPSLIPDAADLIATFLEGESDPTCKRNGFAALSSISHDKALSYLGTVFEGIPNAE-----ELLQLVEIEFIRKDHNPQNKPRYLRLIFDLLE---ANTSTVVYEAASSLTALTNNP--VAVKAAAGKFIELAIK--------ADNNVKLIVLDRVDQLRQKNEGILDDLIMESSPDIDVRRKALEIALENVEEVVLLLKKELSKQEYEKNSEYRQLLIHSIHQCAVKF-- | |||||||||||||
9 | 3vycA | 0.09 | 0.09 | 3.25 | 1.17 | CNFpred | LQDLAMFLTTYLARNRALLESDRELLLNAHQYLIQLSIEERELFKTTLDYWHNLVADLF-KHIYEEICSQLRLVIIENMVRPE----VLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLVIDTEEIMISKLARQWSWNTLSWAIGSISG-EKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQY-HWNFLRTVILKLFEFMHEVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL----QPQQVHTFYKACGIIISEE-----------RSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTS | |||||||||||||
10 | 6gmhQ | 0.13 | 0.11 | 3.98 | 0.67 | HHsearch-2 | CYQLARSFHVQEDYDQAFQYASSSFFEKVLKALYAASE--D--QEKRD-IAKGHLKKVEQYPDDVEAWIELAQ-ILEQTDIQGALSA--------YGTARILQKVQADVP--PEILNALHFRLGNLGEAKKYFLASLDRAKAEHYYNAISVTTYEAEFHEAEKLYKNILR----EHPNYVDCYLRLG-AMARDKGNF-YEASDWFKEALQINQ--DHPDAWSLIGNLERILKQPSTQS----DTYSMLALGNV--WLQTLHQPTDKRHQDRALAIYKQVLRNDAKNL-YAANAHKGYFREARDVFAQVREATADIDVWLNLAHIYV----EQKQYISAVQMYENCLRFYKH | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |