>PF11955 (328 residues) VRDRGLDHAVEREKHLKPLISLKNLIKREPSKSLPISIVTQNKESLQLPFRPVEFTRKYP SVFHEFLPVAAALNAPHIRLTPQALSIDSDEQLLYQSDGYKEQIANRLLKLLMISRIHKI PLSIIEHLKWDLGLPHDYLHGVIPEFPDYFRVVQEKSRAFRNDDDRVLELVCWSNELAVS VMEKKNKKKGSDSEFPVQFSTGFEMDRSYQRWLSQWQKLPYVSPYENAAHLSASSDESDR WVVGVLHEILHVLVPKKTEKDNLLILGDWLGLRSRFKRALLQHPGIFYLSSKIGTQTVVL REGYKRGSLAERHPFMDLRSQYIHLMNT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VRDRGLDHAVEREKHLKPLISLKNLIKREPSKSLPISIVTQNKESLQLPFRPVEFTRKYPSVFHEFLPVAAALNAPHIRLTPQALSIDSDEQLLYQSDGYKEQIANRLLKLLMISRIHKIPLSIIEHLKWDLGLPHDYLHGVIPEFPDYFRVVQEKSRAFRNDDDRVLELVCWSNELAVSVMEKKNKKKGSDSEFPVQFSTGFEMDRSYQRWLSQWQKLPYVSPYENAAHLSASSDESDRWVVGVLHEILHVLVPKKTEKDNLLILGDWLGLRSRFKRALLQHPGIFYLSSKIGTQTVVLREGYKRGSLAERHPFMDLRSQYIHLMNT | |||||||||||||||||||
1 | 2iwhB | 0.14 | 0.12 | 4.09 | 0.78 | SPARKS-K | IMVPLLSRGLIKRKSAVIIDNMCKLV--EDPQVILLPGLKSNFATIADPLRALKTLRRVGNV----AIPELSHAGDV----STTLQVVNELLK--DETVAFKIVVEYIAAIGADLIDERIQQAWFTHITPYMTIFDEFRKRAVDNIPDLFSLAYGAKILLNKTQLRLKYGICGPNGCGKSTLMRAIANGQVD-GFPCRFESGVGTKEAIKDKLIEFIAMP-------ISALS----GGWKMKLALARAVLRLLDEPTLDTVNVAWLVNYLNIT------------SITISH----DSVFLIINYEGLKLKYKGNFTEFVKKCPAAKAY | |||||||||||||
2 | 4hnwA1 | 0.09 | 0.07 | 2.68 | 0.71 | FFAS-3D | IALKKENDQFLEALKLKSLKLLDAILKKDGSHVDSLALKGLDLYSVGEKDDAASYVAN-----------------AIRKIESASPICCHVLGIYMRNTKEYKESIKWFTAALNNGSTNKQIYRDLATLQSQIG----------------------------------------DFKNALVSRKKYWEAFLGYRANWTSLAVAQDVNGERQQAINTLSQFEKLAEGKIMYKAASDNQDKLQNVLKHLNDIEPCVFDKFGLLERKATIYMKLGQLKDYRTLIKRNPD-------NFKYYKLLEVSLGIQG--DNKLKKALYGKLEQF--- | |||||||||||||
3 | 3n6sA | 0.12 | 0.10 | 3.57 | 0.37 | HHpred | --EDLLKNLLTMGVDIDMAKRQPGVFHRMITNE---QDLKMFLLSKGASKVIASIISRYPRAITRT---------PE-NLSKRWDLWR----KIVT---SDLEIVNILEESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDLN-K---QMVEFLQAASLDPA---DFVRKII------FKNPFIL--IQS-TKRVKANIEFLRSFAEILDLSNDYEFSLGCTEEEVKFVLSYPDVIFLAEKK--FNDKIDCLME-ENISIS---QIIENPRVLDSSISTSRIKELVNAGCNLSTLLLSWSKKRYEAKLKKLS-- | |||||||||||||
4 | 3n6sA | 0.14 | 0.12 | 4.05 | 0.74 | MUSTER | KNEDLLKNLLTM--DIDMARKRQPGVFHRMITN--EQDLKMFLLSKGASKVIASIISRYPRAI--------TRTP------ENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNL--LENNIKFLYSVGLTRKCLCRLLTNAPRTFSN----SLDLNKQMVEFLQGLSLGHNDPADFVRKIIFK----------NPFILIQSKRVKANIEFLRST-----------FNLNSEELLVLICGPGAEILDLYARRS--YANIKEKLFSLGCTEEVQKFVLSYPDVIFLAEK--NDKICLME-ISISQIIE---ISTLKSRIKELVNA | |||||||||||||
5 | 3mvbO | 0.12 | 0.09 | 3.05 | 0.91 | CNFpred | --EDLLKNLLTMGVDIDMARKRQPGVFHRM--ITNEQDLKMFLLSKGASKVIASIISRYPRAITRT--------------PENLSKRWDLWRKIVTSDLEIVNILEASPESFFRSNNNLNLENNIKFL-YSVGLTRKCLCRLLTNAPRTFSNS----------------------------------------------------LDLNKQMVEFLQAAG-------------GHNDPADFVRKIIFKNPILIQSTKRVKANIEFLRSTFNLNSELLVLICGPAEILDLSNDAARSYANIKEKLFSLGCT-EEEVQKFVLSYPDVIFL | |||||||||||||
6 | 2pffB | 0.12 | 0.11 | 3.84 | 0.78 | HHsearch-2 | IHALAAKLLQENDTTLVKKELIKNYITARIM----------AKRPFDKKSNFRAVGEGNAQLVAIFGGQGNT--DDYEELVGDLIKFSAETLSERTTLDAEKVFTQGLNKDYLLSIPISCPLIGVIQLAKLLGFTPGELRSYLKGHSQLVTAVAIAETDSVRKTVLFFIGVRCYESLPPSILEDSLENNEG------VPSPMLSIQEQVQDYVNKTNHLPAGKQVEIS-LVNGAKNLV---VSGPPQSLYNLTLRKAKA---------PSGL---------DQSRIPFSERKLKFSNRFLPVASPHSHLLVPASDLINKDLVVDCIIK | |||||||||||||
7 | 3tnfB | 0.10 | 0.09 | 3.19 | 0.83 | Neff-PPAS | --EQAIKRAQENIKKGEELEKKLDKLERQGKDLEDLEGFEKLLTDSE--------------------------ELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMS-----------TDPKENEEATKLLHKHNGLNLKLANLQDMLAVHREKSFFNEKGEEVTSLNDAHYVIGKDQQHKEQKILEKDGKFYLLKQGKQKKAEHDFHKLQYE | |||||||||||||
8 | 5yadA | 0.11 | 0.02 | 0.87 | 0.55 | HHsearch | ---------GAANKSLLLSTET-SILQDAPACCLPLFKFIDYEKKYGHKLNVSDL-YKLTDTIAIREQGN----GRLVCLLPSNQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3n6sA | 0.15 | 0.11 | 3.81 | 0.95 | SP3 | V---DIDMARKRQ---------PGVFHRMITN---EQDLKMFLLSKGASKEIASIISRYPRAI--------TRTP------ENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNL-NLENNIKFLYSVGLTRKCLCRLLTNAPRTF----SNSLDLNKQMVEFLQGLSLGHNDPADFVRKIIFKNPFILIQS---------TKRVKANIEFLRS-----------TFNLNSEELLVLICGPGAEILDLSNYARRSYANIKEKLFSLGCTEEVQKFVLSYPDVIFLA------------------------EKKFNDKIDCLMEE | |||||||||||||
10 | 4leiA | 0.09 | 0.08 | 3.10 | 0.82 | PROSPECTOR2 | SHLPASSHFF-------NLVPLAWALRAAGHEVRVA-----------ICPNMVSMVTGAGLTAVPVGDELDLIHLVDDRSLDDLMGFAEKWPVVARALDVSGWLRSGFLEYQESKPRVDPLGTWLGAKLAKFGATFDEEIVT-----GQATIDPIPSWMRLPVDLDYISMRFVPYNGPAVLPEWLRERPTKPRVCLTKRRLSRVEQAMVERLLRGAARLDVATLSDDEVELPSNHEYVPLNELTTQETATV------------------NGVPSRRAELLADRGAGLVLDPATFTEDDVLARLLDEPSFEESPSPHDIVPRLEKLVAE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |