Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | KQVDTNAKNVFGQPRLRASLRDLRSPRKNYKSTIEDDLKKLIVMDNLGPEQERDTGQSPQKSLQRTLSDESLCSGRREPSFASPASLEPGLPSDVLFTSTCTFPSSTLPARRQHQHAHPPSGAPSTTPATGNGFPEKKSAISASELSLADGRDRPLRRLDPGMMPLPDTAAGLEWSSLVNAAKAYEVQRAVSLFSLNDPALSPEIPPAHSPVHSHLSLERGPQTPRATPTMSEESPLDLTGKVYQLEVMLK |
1 | 4btgA3 | 0.12 | 0.12 | 4.11 | 1.30 | SPARKS-K | | LQLPLQFTRTFSASMTSERVGRTATYPFDANAVVSSVLTILGRLWSPSTPKELDPSARLRNTIDQLRSNLALFIGRAEVIFSDSPFKLRPINETTYIGQTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKL-ANNSNQRFLDVEPGISDGNTRGTVNSNGAEMTFPSVALDRDPMVAIAALRTGSMFNYYAAVMHYAVAHNPEVAAEQGSLYLVWNVRTELRIPVGYNAIEGGSI--RTPEPLEAIAYNK |
2 | 6fmlG | 0.09 | 0.09 | 3.47 | 1.23 | MUSTER | | YSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPERSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPSMAGKLAKLDELLR |
3 | 2tmaA | 0.09 | 0.09 | 3.47 | 1.98 | Neff-PPAS | | KKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQ--KKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID |
4 | 4k0mC | 0.11 | 0.08 | 3.02 | 1.18 | PROSPECTOR2 | | KVYTI--------------DEAARTAKFDETVEVHAKL----GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEI-----IQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------A |
5 | 3j2k71 | 0.07 | 0.06 | 2.64 | 1.22 | SPARKS-K | | PKSVVAPPGAPKKEHVNVVFIG---HVDAGKSTIGGQIMYLTGDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG--EFETGFEKGGQTREHAMLAKTAGVKHLIVLINKDPTVNWSN------ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGNLKEQSDFCPWYIGLPFNLPNFNRSVDG--------- |
6 | 2akhY | 0.13 | 0.12 | 3.99 | 0.52 | FFAS-3D | | SFISIFALGIM--PYISASIAEIKKEGESGRRKISQSIGIATGLPNMPGMQGLVINPGFAFYLGEQITERGIGNG---ISIIIFAGIVAGLPPAI---------AHTIEQARQGDLHFLVERGQRRIVVNYAKRQQGRRVYAAQSTHL------PLKVNMAGVIPA----------IFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQTALVFNPRETADNLKKSPGEQTAKYIDKVMTRLTLV-- |
7 | 2gqbA | 0.25 | 0.07 | 2.10 | 0.29 | HHpred | | --------------DVAPILDKAAKGEKEWRTSIV-DLMKALDIDSSLS---------ARKE----LAKELGYSGDMNDSA-SMNILHKKLPPEIK----------------------------------------------------------------------------------------------------------------------------------------------------------- |
8 | 6etxG | 0.12 | 0.12 | 4.33 | 1.00 | MUSTER | | ERQETWSPFHISLKPYHISKFIYRHGQIRVFNHSRDRWLRVLSPFAPFHRKGINEESCFSFLRFIDISPASWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLT |
9 | 4cruA | 0.10 | 0.03 | 1.04 | 0.47 | CNFpred | | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRMRIAAHHMMRNLTAGMA---MITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELACCFI |
10 | 2pffB | 0.17 | 0.16 | 5.23 | 0.49 | HHsearch-2 | | SKVGQFAKRPFDKKSNSALFRAVGEAQLVATDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLRCYEAYPNTSLPPSI-----------------LEDSLENNEPMLSISNLTQEQVQDSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLLTLRAKAPSGLDQSRIPFEFLPVASPFHSHLLVNVSFNAPVYDT-FDGSDLRVLSGSISEVDCIIR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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