>PF11854 (635 residues) YNDSNDIRSANAFAAEDEFAGKLDADVKYVSESGYQASIEADNLGMENGRLDVNAGKAGQ YNLNLNYRQIATYKTDQAMSPYQGAGSDHLTLPDNWQTAGSSQDMTQLYSSLNPLELSLK RKRAGLGFEYQGEELWSTYVNYQREDKTGLKQASGSFFNQSMMLAEPVDYTTDTIEAGIK LRGDNWFTALNYSGSSFKNQYSQLTFDNAFNPTFGAQTQGTMALDPDNEAHTVSLMGQVT AGKTIMSGRVHYGQMTQDQAFVTSGYGYDMPADSLDGRVDMQGVNLKLVSRISSSVRLNA SYDYSDRDNKTNVEEWTQISIDSTTGQVAYNTPYDITTQRAKLGADYRIARGMRLEAGYD YRQDERSYQDRETTDEHTLWTKFRLNSFDEWDMWIKGSYGERDGSEYQASEWTSSESNDL LRKYNLADRKRSMVEARVTHTPIDALTIDFGTRYALDDYNDTQIGLTESKDLSYDINASY LINDDMMVNAFYSRQNIESEQAGSTNFSTPNWYGVVEDQVDVIGAGFSYNNLMEKKLRLG IDYTYSDSNSNTQVTQGITGDYGDYYAKAHNVNVYGQYQATEKMALRLDYKMEKYRDNDA GNDIAPDGIWNVVGFGSNSQDYTAHLIMLSMSYKL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | YNDSNDIRSANAFAAEDEFAGKLDADVKYVSESGYQASIEADNLGMENGRLDVNAGKAGQYNLNLNYRQIATYKTDQAMSPYQGAGSDHLTLPDNWQTAGSSQDMTQLYSSLNPLELSLKRKRAGLGFEYQGEELWSTYVNYQREDKTGLKQASGSFFNQSMMLAEPVDYTTDTIEAGIKLRGDNWFTALNYSGSSFKNQYSQLTFDNAFNPTFGAQTQGTMALDPDNEAHTVSLMGQVTAGKTIMSGRVHYGQMTQDQAFVTSGYGYDMPADSLDGRVDMQGVNLKLVSRISSSVRLNASYDYSDRDNKTNVEEWTQISIDSTTGQVAYNTPYDITTQRAKLGADYRIARGMRLEAGYDYRQDERSYQDRETTDEHTLWTKFRLNSFDEWDMWIKGSYGERDGSEYQASEWTSSESNDLLRKYNLADRKRSMVEARVTHTPIDALTIDFGTRYALDDYNDTQIGLTESKDLSYDINASYLINDDMMVNAFYSRQNIESEQAGSTNFSTPNWYGVVEDQVDVIGAGFSYNNLMEKKLRLGIDYTYSDSNSNTQVTQGITGDYGDYYAKAHNVNVYGQYQATEKMALRLDYKMEKYRDNDAGNDIAPDGIWNVVGFGSNSQDYTAHLIMLSMSYKL | |||||||||||||||||||
1 | 1xkwA | 0.09 | 0.08 | 2.98 | 2.23 | SPARKS-K | ASVIDHERLEQQ------NLFSLGVTVQPFQLLTTAYYVRGFKV---DSFELVPALLGNTASSPQDMAIYERVEILRGSNGLLHGTGNPAATVNLVRKRPQREFAASTTLSAGR--WDRYRAEVDVGGPLSASGNVRGRAVAAYEDRDYFYDVAD--------------QGTRLLYGVTEFDLSDTLLTVGAQYQHIDNMAGVPMAKDGSNLGLSRDTYLDVDWDRKWDTYRAFGSLEQQLGGWKGKVSAEYQEADSRLRYSFGAIDPQTGDGGYKFKSIQRSLDANLNGPVRLTHELLGGVTYAQGETRQDTARFLNLPWDPHGVPYTSPGTTTTTQKGLYALGRIKLAEPLTLVVGGRESWWDQDTPATRFKPQFTPYGGLIWDFARDWSWYVSYAEVYQPP---------------------LSPVEGKTYETGIKGELADRLNLSLAAFRIDLENNPFYISGGKVRSQGFELEGTGYLTPYWSLSAGYTYTSTEYLKDSQNDSGTRYSTFTPR---HLLRLWSNYDLPWQDRWSVGGGLQAQSDYSVDYR--GVSMRQGG----YALVNMRLGYKIDEHW--TAAVNVNNLFDRTYY--------QSLSNPNWNNRYGEPRSFNVSLRGAF | |||||||||||||
2 | 6e4vA | 0.11 | 0.09 | 3.30 | 1.91 | FFAS-3D | MVDGDMALFERTGTGNPS--AAINMVRKHATSREFKGDVSAEYGSWNKERYVADLQEDGKARIVGGYQNNDSWLDR----------------------------------------YNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWGGLPRWNTDGSAYNDKEINKVFMTLKQQADTWQATLNATHSEVEFDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFAD-------------------------GSYELFGRQHNLMFGGSQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTTHMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQNDRDSSGKY------------LAPITGNNYELGLKSDWMNRLTTTLAIFRIEQDNETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVNPNLPR---------TTVKMFTSYRLPVMPELTVGGGVNWQ---NRVYTDTVTPYGTFRAEQGSYAVDLFTRYQVTKNFSLQGNVN-------NLFDKTYDTNVEGSIVYGTPR------NFSITGTYQF | |||||||||||||
3 | 4aipA | 0.11 | 0.10 | 3.73 | 2.79 | HHpred | -----ATDMRELLKEEPSIDF------GG-G-NGTSQFLTLRGMGQNSVDIKVDNAYSDSQRFIVDPALVKVVSVQK------GAGSASAGITNGAIIAKTVDAQDLLKGKGVRLNSGFNGVSYGASVFGKE-GNFDGLFSYNRNDEKDYEAGKGFRNVNGGKTVPYSALDKRSYLAKIGTTFGDHRIVLSHMKDQHRGIR----TVREEFTVGDKSRINDRQAPAYRETTQSNTNLAYTGLVEKLDANAYVLEKERYSADDSGTGYAGNVKGPNHTRITTRGANFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNSKFSIPTDTVHAYKLSNPTKTDTGVYIEAIHDI-GDFTLTGGLRYDRFKVKTHDTVSSSNLNPSFGVIWQPHEHWSFSASHNYASRSPRLYDALQTHGISIADGTKA-----ERARNTEIGFNYND-GTFAANGSYFWTIKDALANAVNAGYIKNHGYELGASYRT-GGLTAKVGVSHSKPRFYDTHKDLLSA--NPEFGAQVGRTWTASLAYRF-QNPNLEIGWRGRYVQKATGSILAALENVVRKGF----GVNDVFANWKPLDTLNVNLS--VNNVFNKFYYPHSQRW---------TNTLPGVGRDVRLGVNYKF | |||||||||||||
4 | 5mzsA | 0.09 | 0.09 | 3.33 | 2.05 | MUSTER | RPPSND--LSQIIRTMPGVNLTGN---SSSGQRGNNRQIDIRGMGPENTLILV-KPVSSRNSVRYGWRGERDSRGDTNWVPADGNGAANIITKQAGAETHGNLSVYSNFPQHKAE---GASERMSFGLNGPLTENLSYRVYGNIAKTDSDDWDINAGHESNTLPAGREGVRNKDIDGLLSWRLPEQTLEFEAGFSRQGN---IYTGDTQNTNSNNYVKQMLGHETNRMYRETYSVTHRGEWDFGSSLAYLQYEKTRNSRINEGLAGGTEGNAGFYTATLRDLTAHGEVNLPLHYEQTLTLGSEWTEQKLDDPSSNTQNTEEGGSLAGKNRSSSSSARIFSLFAEDNIELMPGTMLTPGLRWDHHDIVGDN------WSPSLNLSHALTERVTLKAGIARAYKAPNLYQLNPDYLLYSAGAGCYGQSTSCTSVNKELGIEYSH-DGLVAGLTYFRNDYGLSPVDHASGGKVVEGLEGTLTLPLADGLKWSNNLTYMLQSKNKETDVLSVTPR---------YTLNSMLDWQA--TDDLSLQATVTWYGKQKPKKYDYHGVTGSANDQLSYAIAGLGGTYRLSKNLSLGAGVD---LFDKRLFRAGNAQGVVGIDGAGAATYNEPGRTFYTSLTASF | |||||||||||||
5 | 1xkwA | 0.09 | 0.08 | 2.91 | 5.59 | CNFpred | ---------------------ATGVTVQPFQ--LLTTAYYVRGFK--VDSFELDGVPA-TASSPQDMAIYERVEILRGSNGLLHGTGNPAATVNLVRKRPQREFAASTTLSAG--RWDRYRAEVDVGGPLSASGNVRGRAVAAYEDRDYFYDV--------------ADQGTRLLYGVTEFDLSDTLLTVGAQYQHIDSITNMAGVPMAKGSNLGLSRDTYLDVD-KWDTYRAFGSLEQQLGGWKGKVSAEYQEADSRLRYAGSFGAGQLMGAAYKFKSIQRSLDANLNGPVRLTHELLGGVTYAQGETRQDTAR-TPVNV-PQIGQYTSPGTTTTTQKGLYALGRIKLAEPLTLVVGGRESWWDQDTTRFKPGRQFTPYGGLIWDFARDWSWYVSYAEVYQP---------------------PLSPVEGKTYETGIKGELAGRLNLSLAFRIDLENNPQEDISGGKVRSQGFELEGTGYLTPYWSLSAGYTYTSTEYLKDSQNDS---GTRYSTFTPRHLLRLWSNYDLPWDRRWSVGGGLQAQSDYSVDYR--GVSMRQG----GYALVNMRLGYKIDEHWTAAV--NVNNLFDRTYYQSLS--NPNWNNRYGE------PRSFNVSLRGAF | |||||||||||||
6 | 4aipA | 0.11 | 0.10 | 3.61 | 1.30 | HHsearch-2 | IVTLTATDMRELLKEEPSIDFGQFLTLRGMGQ--NSVDIKVDNAYSDSQIL----YHQGRF--IVDPALVKVVSVQKGSASAGIG------ATNGAIIAKTVDANWGVRLNSGFASN--NGVSYGASVFGKE-GNFDGLFSYNRNDEKDYEAGKGFRNVNGGKTVPYSALDKRSYLAKIGTTFGDHRIVLSHMKDQHRGIRTVREFTVGDKS---SRINIDRQAPAYRETTQSNTNLAYTGKVEKLDANAYVLEKERYSADDSGTGYAGNVKGPNHTRITTRGANFNFDSRLAEQTLLKYGINYRHQEIKPQAFLNSKFSIPTDTVHAYKLSNPTKTDTGVYIEAIHDI-GDFTLTGGLRYDRFKVKTHDTVSSSNLNPSFGVIWQPHEHWSFSASHNYASRSPRLYDALQTHIISIADGTKA-----ERARNTEIGFNYN-DGTFAANGSYFWTIKDALANAVNAGYIKNHGYELGASYRT-GGLTAKVGVSHSKPRFYDTHKDLLS--ANPEFGAQVGRTWTASLAYRF-QNPNLEIGWRGRYVQKATGSILAALENVVRKGF----GVNDVFANWKPLDTLNVNLS--VNNVFNKFYYPHSQRW---------TNTLPGVGRDVRLGVNYKF | |||||||||||||
7 | 3v89A | 0.08 | 0.08 | 3.19 | 2.86 | Neff-PPAS | EGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSIVKEECKNGSYETCKANPKKDVVGKDERQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFENKHYIGGILEHTQQTFDTRDMTVPAFLTKAVFDANKKQAGSLPGNGKYAGNHKYGGLFTNGEALVGAEYGTGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGVGLDNHFQQTHCSADGSDKYCRPSADKPFDRVIYGESHRLLQAAFKKSFRHNLSVNLGFDRFGSNLRHQDYYYQHANRAYSSNTPPQNNGKKISPNGSESPYWVTIGRGNVVTGQICRLGNNTYTDCTPNGKSYYAAVRDNVRLGRWADVGAGLRYDYRSTHSDDGSVSTGTH-------------RTLSWNAGIVLKPTDWLDLTYRTSTGFRGVQSKAVKIDPEKSFNKEAGIVFK-GDFGNLEASWFNNAYRDLIVRGKEEAKGDPAYLNAQSARITGINILGKIDW-NGWYSTFAYNRVRVRDIKKRADRTDIQHLFDAIQPSRYVVGLGYDQPEGWGVNGMLTYSAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYYTV | |||||||||||||
8 | 6bpmC | 0.11 | 0.10 | 3.66 | 1.90 | HHsearch | VISEQATNLTDALKNVPGVAFGDAIYMRGAD-TS--NSIYIDGIRDI-----------GSVSRD--TFNTEQVEVIKSGTDYGRS------APTGSINMISRNDGIDASASIG--S--AWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRD-------------KVKNERYGVAPSVAFGLGANRLYLNYLHVTQHNTPDGIPTIGLPGNSGKVDTHNFYGTYDDSTTDTATMRFEHDINNTTIRNTTRWSRVKQDYLMTAGGASNIWSRNTKDVSNKILTNQTNLTSTTGIGHDVSTGVEFTRETQTNYGVNPVTYHPDSPGGLTGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSAKSGNLMNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSSANRTDFKP-----QKANTSEIGTKWQVLDRLLLTAALFRDIENEVEQYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDV--AQDGSSSLPYTPEHAFTLWSQYQA-T-DDISVGAGARYIGSMHKGSDGAGTPAFTEGY----WVADAKLGYRVNRNLDFQLN--VYNLFDTDYVASINK---SGY-----RYHPGEPRTFLLTANMH- | |||||||||||||
9 | 5mzsA | 0.10 | 0.09 | 3.37 | 3.04 | PROSPECTOR2 | VVATTAEDIAKRPPSNDGVNLTGNSSS---GQRGNNRQIDIRGMGPENTLILVDGKPVSSRNS-----------VRYGWRGERDSRGDTNWVPADQQAGAETHGNLSVYSNFPQHKAEGASERMSFGLNGPLTENLSYRVYGNIAKTDSDDWDINAGHESNRLPAGREGVRNKDIDGLLSWRLPEQTLEFEAGFSRQG---NIYTGDTQNTNSNNYVKQMLGHETNRMYRETYSVTHRGEWDFGSSLAYLQYEKTRNSRINEGLADPNNAGFYTATLRDLTAHGEVNLPLHLGYEQTLTLGSEWTEQKLDDPSSNTQNTEEGPGLAGKNRSSSSSARIFSLFAEDNIELMPGTMLTPGLRWDHH------DIVGDNWSPSLNLSHALTERVTLKAGIARAYKAPNLYQLNPDYLLYSAGAGCYGQSTSETSVNKELGIEYSH-DGLVAGLTYFRNDNAAIYQWENVPKAVVEGLEGTLTLPLADGLKWSNNLTYMLQSKNKETGDVLSVT--------PRYTLNSMLDWQ--ATDDLSLQATVTWYGKQKPKKYDYHGDRVTGDQLSPYAIAGLGGTYRLSKNLSLGAG--VDNLFDKRLFRAGNAQGVVGIDGAGAATYNEPGRTFYTSLTASF | |||||||||||||
10 | 6bpmC | 0.10 | 0.09 | 3.38 | 3.05 | SAM | -ISEQVIKDQGATNLTDALKNVPGVAFFAGEN-GTGDAIYMRGADTS-NSIYIDGIRDI-GSVSRDTFNTEQVEVIKGPSGTDYGR----SAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDGRDKVK--------------NERYGVAPSVAFGLGANRLYLNYLHVTQHNTPDGGPTIGSGKVDTHNFYGT-DSDYDDSTTDTATMRFEHDINNTTIRNTTRWSRVKQDYLMTAMGGASN-TANTKDVSNKILTNQTNLTSTFYIGHDVSTGVEFTRETQTNYGVNPV-NIYHPDSSI--ANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDTAKSGNLMNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGANRTDFKP-----QKANTSEIGTKWQVLDRLLLTAALFRDIENEVEQNSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDV--AQDGSSSLPYTPEHAFTLWSQYQA-T-DDISVGAGARYIGSMHKGSDT---PAFTEGY----WVADAKLGYRVNRNLDFQLN--VYNLFDTDYVAS-----------ISGYRHPGEPRTFLLTANMHF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |