>PF11850 (422 residues) QQVRPLPGSLDRVPVFNSNSPEVVQTEGILLSTFPPSGKQTANAHLNFPFQGRFDIFAHH IAKATSPEDLRTLYLGVLLHNPSTQPVTVDVLQAASYLSQPDAPFIELPPQTENPLGTIF AGPGDRVMNDILRGRRQSVFPAQITIPPQQSQMLLNLPIPVQTLEPPINGRSTLMRLRSS GRVYAASLAMYAKSNADGSERAPTLTEWQQLLETGNLAGPRDRAPTPPEASGKVIYGRVA GVAQGSQWQAQLVDSPNVQHLSIPQRGQAFSYGLSTLTAGRQGTSQVQSAPLMVRYPDTA YQAHGNYGIEYNLSLPLYNNTTQPQTIGVSLQTPIKEDELTQGGLRFLIPPATQNFFRGT VRLRYSDDRGLPQTRYVHLVQKRGQAGEPLVLLNMPPGDRRLVQFDFLYPPDATPPQVLT IQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | QQVRPLPGSLDRVPVFNSNSPEVVQTEGILLSTFPPSGKQTANAHLNFPFQGRFDIFAHHIAKATSPEDLRTLYLGVLLHNPSTQPVTVDVLQAASYLSQPDAPFIELPPQTENPLGTIFAGPGDRVMNDILRGRRQSVFPAQITIPPQQSQMLLNLPIPVQTLEPPINGRSTLMRLRSSGRVYAASLAMYAKSNADGSERAPTLTEWQQLLETGNLAGPRDRAPTPPEASGKVIYGRVAGVAQGSQWQAQLVDSPNVQHLSIPQRGQAFSYGLSTLTAGRQGTSQVQSAPLMVRYPDTAYQAHGNYGIEYNLSLPLYNNTTQPQTIGVSLQTPIKEDELTQGGLRFLIPPATQNFFRGTVRLRYSDDRGLPQTRYVHLVQKRGQAGEPLVLLNMPPGDRRLVQFDFLYPPDATPPQVLTIQ | |||||||||||||||||||
1 | 4d94A | 0.12 | 0.09 | 3.16 | 1.36 | CNFpred | ------------LMRFMVTCTERM--TFFVYYVMS-----------------KGNIIDAGFMRP----KQPKYLLQLNATEKMIPRAKILIATVA---------------------RTVVYD------------------FADLDFQELRNNFDLSIDE--QEIKP---GRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDG-------NEFDIFH------SLGLFARTL-SWLWKNVSIGRSRKLIEVVPD--TTTSWYLTGFSIYGLGI-FTTVQPFYIVENLPYSIK---RGEAVVLQFTLFNNLGAEYIADVTLYNV-------ANQTEFVGRPNTDLSYTKSVSVPPK----VGVPISFLIKARK--LGEMAVRVKASETDALEKVIRVMPES-RMDTRFFCFD | |||||||||||||
2 | 3cm9S1 | 0.10 | 0.09 | 3.48 | 1.13 | Neff-PPAS | --YPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS-----QDDSGRYKCGLGINSRGLSFDVSLEVS-------QGPGLLNDTKVYTVDLGPFKTENAQKRKSLYKQIGLY--PVLVIDSSGYVNPNYTGRIRLDIQG--TGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQ----------VLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRFEGRILLNPQDKDGSFSVVITGLRKEDAGRAHSDGQLQEGSPIQAWQL-FVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW---EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDARTTVEIKII | |||||||||||||
3 | 1crua | 0.10 | 0.09 | 3.46 | 1.20 | PROSPECTOR2 | DVPKAKSENFDKKVILSNNKPHALSGSVKTVFQVPEIVNDADGQNGDFKNNPYI-YISGTFKNPKSKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQQGRNQLAYLFLPNQAQHTPTQQELN---GKDYHTYMGKVLRLNLDG-----------SIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKDDSGYAYA----------NYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYIC----------WPTVAPSSAYVYKGGKKAITGWENTLLVPSLKRGVIFR----IKLDPTYSTTYDDAVPMFKSNNRDGNVLYVLTDTAGNVQKDDGSVT-NTLENPGSLIKFT | |||||||||||||
4 | 4zchA | 0.09 | 0.08 | 3.03 | 0.90 | SPARKS-K | WQPALRRGR-----GLQAQGYGRIQDAGVYLLYLFQDVTFTMGQVVSREGQRQETLFRCIRSMPHPDRAYNSCYSAGVFHLHQGDILSVIIP-------RARAKLNLS-------PHGTFLGFVKQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSALEEKILVKETGIYGQVLYTDKTYAMGHLIQRKKVHVFGDELSL---------------VTLFRCIQNMPETLPNCYSAGIAKLEEGDELQLAIPREN----AQISLDGDVTFFGALKLLGVT------QDCLQLIADSETPTITFVPWLLSFKRKILVK----ETGYFFIYGQVLYTDK---------------TYAMGHLIQRKKVHVFGDSLVTLFRCIQNMPETLPNAGIAKLEEGDELQLAIQISLDGDVTFFGALKLL | |||||||||||||
5 | 3q2vA | 0.09 | 0.08 | 2.99 | 0.77 | FFAS-3D | ---ENEKGEF--PKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIERETGWLKVLYSHAVSSNGEAVEDPMEIVITVTDQNDNRFEGSVAE-----GAVPGTSVMKVSATDADDDV--NTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG---------------LDRESYPTYTLVVQAADLQGEGLSTTAK----------AVITVKDINDNAPVFNPSTYQGQVPE--NEVNARIATLKVTDDDAPNTYTVVNDPDQQFVVVTDPTTNDLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIRVEVPEDFGVGQDTFMDQKITYRIWRDTANWLEGAIFTRAEEDAEHVKNSTYVALIIATDDGSP------IATGTGTLLLVLLDVNDNAP------- | |||||||||||||
6 | 3eifA4 | 0.11 | 0.02 | 0.85 | 0.33 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSKVHLNNVSDKFEVTVTVHNKSDKPQELYYQATV-Q-TDK-----------VDGK-----HFALA-------PK-AL----YE-----TSWQKITIPANSSKQVTVPIDASRFSQMKGFLE-- | |||||||||||||
7 | 2eceA | 0.11 | 0.10 | 3.69 | 0.75 | MUSTER | ---RDPTFPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFALCPNGKPNIERRFLIVPGLRSS---RIYIIDTKPNPREPKIKVIEPEEVKKVSGYSVHCGPDAIYISAL--GNEEGEGPGGILM-HYSFEPLGKWEIDRGDQYLAYD-----FWWNLPNE----VLVSSEWAVPNTIEDGLKLEHLKDRYGNRDLRKRKRIHSLTLGEENRMALELRPLHDPKLMGFINMVVSLKDLSSSIYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLDISLDDKFSLWGIGEVRQYDNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQ-------MLEIS-RDGRTNSLYSTWDNQFYPEGLKGWMVKLNANPSGGLEIDKEFFVDFGEARSHQVRLS | |||||||||||||
8 | 2pn5A | 0.12 | 0.09 | 3.11 | 1.33 | CNFpred | ------------LMRFMVTCTERM--TFFVYYVMSK-GNIIDAGFMRPNKQPKYLLQLNATE-----KMIPRAKILIATVAG---RTVVYDFA-------------------------------------------------DLAFQELRNNFDLSIDE--QEIKP---GRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGFH---EFDIF---------HSLGLFARTL-SWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIYGLGI-FTTVQPFYIVENLPYSIK---RGEAVVLQFTLFNNLGAEYIADVTLYNV-------ANQTEFVGRPNTDLSYTKSVSVPPK----VGVPISFLIKARK--LGEMAVRVKASETDALEKVIRVMPE-PRMDTRFFCFD | |||||||||||||
9 | 5cl2A | 0.12 | 0.07 | 2.35 | 0.48 | HHsearch-2 | -----------------------------------IGAA-----------KVDT-ILEKDAYFPG-----EEVQGTVHVKGGK-IAQDIRYIDLQLSTRY-VIVK---------DDEEHRK-------YATI-HS--FRVTGSFTIQPGEHQFPFTFTLPLD--TPI----TV-----GKVEVAVVTDLDIQGG-IDRIEAHPWIENVLEAIENL-----------------GFRLNE-ADCEQAPY------------------------------FQR--RLPFVQEFE---FVPTS-----GYYQMLDELELIFLLD---EDGLEIIFE----VDRRARGLRGWLEEMYNDGEQLVRVRFSQSELEDTLEEVLEEILDQYAE------------------------------------- | |||||||||||||
10 | 2qqpG | 0.13 | 0.13 | 4.34 | 1.06 | Neff-PPAS | ESDLPLDGKLWRVSFISFPAFR----LNFIALANINNEALTLETRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYSIYVLPNTTDSVTQFRKVYKGITFEFNAPHIPVKPQSETIPAAERFSAGSMTVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNSVWTFTA-----------PASILAEGEPFAEEGDTTSFSMTTITAD----TVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSIEMPALTTEEV-TTNVPKYEQFLCKESGGAYIVHYKMNNPVFEMTGEENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFWGISQSATIVCKTYDGWEGTTNAGSTVGQFAHTGAEEEDEVVQLANRLQMELTGVYQAD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |