Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | QLRGKHSMMNPPPKKRHTHTPPKRIKLPKQALKRLKPLYTAYFTLQRALADDKPKRAHKAYKQLGAFLRRPLTLHARTQKTWQKLRVGLYDAFKKGNTHTTLAPQRAAFEDISKQVIQLEQRFGHAGKKEHFLAYCPMAFNNRGAYWLQDQKDLLNPYFGHSMLRCGEIK |
1 | 5cwiA1 | 0.16 | 0.10 | 3.34 | 0.80 | SPARKS-K | | ----------------------DIEKLCKKAESEAREARSKAEELRQRAARDAASQAEEAVKLACELAQEHPNADKLCIKAASEAAEAASKAAELAQRHPDSQAARDAIKLASQAAEAVKLACELAQEHPN--------------------------------------- |
2 | 1vykA | 0.09 | 0.06 | 2.43 | 0.87 | FFAS-3D | | VVGPPPPLT--------KDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYISAKPKDEKKSLQELTSKLFSSIDNLAKIKSPTEAEKYYGQTVSNINEVLAKLG---------------------------------------------- |
3 | 3u8pA1 | 0.11 | 0.06 | 2.32 | 0.25 | HHpred | | -------------------------GGSADLEDNMETLNDNLKVIEK---ADNAAQVKDALTKMRAAALDAQKTPSPEMKDFRHGFDILVGQIDKLANEGKVKEAQAAAEQLKTTRNAYHQKYRG--------------------------------------------- |
4 | 1vykA | 0.12 | 0.08 | 2.94 | 0.77 | MUSTER | | --EARPIVVGPPPPLTKDRFYLQPLP-PTEAAQRAKVSASEILNVKQFIDRKAQNDLRLRASYLRYDLKTVSAKPKDEKKSLQELTSKLFSSIDNLDHAKSPTEAEKYYGQTVSNINEVLAKLG---------------------------------------------- |
5 | 2iiuA | 0.10 | 0.05 | 1.98 | 0.55 | CNFpred | | -------------------------------MDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLLLELLTQQDKIANKAKDISGRVIQLLIPQALQVPFIAYLQRCIDAVGLAQ---------------------------------------------- |
6 | 2pffB | 0.11 | 0.11 | 3.81 | 0.64 | HHsearch-2 | | QGLNLEWLENPSNTPDKD----YLLSIPISCPLIGVGELRSYLKTAVAIAETFFVSVRKAITVLFFIGVRCYELPP---SILEDSLENNEGVPSMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLAKNLV-VSGPPQLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL |
7 | 5cwmA1 | 0.09 | 0.06 | 2.23 | 0.70 | Neff-PPAS | | ----------------------DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQG--------------------------------------- |
8 | 1kanA2 | 0.07 | 0.05 | 1.92 | 0.49 | HHsearch | | ----------------------EAQKFHDAICALVEELFEYAGKWRNIRVQGPTTFLPSLTVQVAMAGAMLHRYTT-SASVLTEAVKGYDHLCQFVMSGQDSEKLLESLENFWNGIQEWTERHGYI----VDVSRIPF-------------------------------- |
9 | 3jcuQ | 0.11 | 0.08 | 2.78 | 0.68 | SP3 | | --EARPIVVGPPPPLSGGLPGTENSLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLSYLRYDLKTISAKPKDEKKSLQELTSKLFSSIDNLDHIKSPTEAEKYYGQTVSNINEVLAKL----------------------------------------------- |
10 | 6f0kH | 0.13 | 0.10 | 3.46 | 0.71 | PROSPECTOR2 | | YPGGVALT--------------------------LAQIEAASEQVAQDL-----EQALAELEALRLLARRDETLAEAILEAHQQAVLEFEHWKEQVAAHPGTARHEALLQQYADVAWAVAQHVNPALLAR-----AYTSSGPRFFFYVVPEQAVPPLQVVRYLAA----Q |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|