Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | RFNHARLLADSLAIRIIRCLLWAGQTAAAVRSWVSHRDRTQDIVNRRGKGSRNYGWEAWESRWSMVMAELIRRAEISPQEQYLAPASHEKPTFTGDGLYPWEQLHHEGYWLYRSAKHAIKRRALAQQIPDEDRPPPGQSPASQIASKSYLYDTYLAPETHVEAPLSGSKGFDHSSLILNTLKAALEEFAKRNQTRKVESLSLEMAEEYVRIGSWSDGLNLLRPLWSTLSWRGSGWWPLMERFGLALRECALQIGDGEMVVRIDWELLS |
1 | 3sf4A | 0.12 | 0.10 | 3.66 | 1.21 | FFAS-3D | | -HHHDLTLARKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELKGKSFGGEFPEEVRDALQAAVDFYEENLSLV-----------------TALGDRAAQGRAFGNLGNTHYDAVIAHEQRLLIAKEF---------GDKAAERRAYSNLGNAYI--------------FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI--AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE |
2 | 4a1sA | 0.09 | 0.07 | 2.66 | 1.07 | CNFpred | | ------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-----------DRLGEAKSSGNLGNTLKVMGRFDEAAI--------------CCERHLTLASEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV----------------------------------EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA |
3 | 4a1sA | 0.09 | 0.08 | 3.12 | 1.05 | Neff-PPAS | | -----LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-----------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN--------PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA |
4 | 1hz4a | 0.12 | 0.12 | 4.19 | 1.00 | PROSPECTOR2 | | NPDEAERLAKVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----HDVWHYALWSLIQQSEILFAQWETQEKAFQLINEQHLEQLPMHEFIEVLSSYQPQQQLQ---CLAMLIQCSLARGRSQLNRLENLLGNGKYHSDWISNANKVNWLRHTAKPEFANNHFLQGQWLLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL--ANRTGFISHFGEAMAQQLRQLIQLNTEQHRAQRILREIN |
5 | 3ulqA | 0.08 | 0.07 | 2.81 | 0.97 | SPARKS-K | | -------SSSSIGEKINEWYMYIRRFSI--PDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RLTGLLEYYFNFFRGMYELDSAIKFFKKAES----------KLIFVKDRIEKAEFFFKMSESYYYMKQ------TYFSMDYARQAYEIYKEHEYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA |
6 | 4a1sA | 0.12 | 0.11 | 3.81 | 1.19 | FFAS-3D | | DYNKAQYHKHDLTLNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVRDLGDRGAQGRACGNLGNTYYAAIEHHQERLRIAREF---------GDRAAERRANSNLGNSHI--------------FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI--AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ |
7 | 5o09C | 0.11 | 0.08 | 2.96 | 0.43 | HHpred | | -VEEARRLVEQI-SVLADLRQKEGDFRKAESLYREALFRAQELRK--QDPD----L---LTGIYSLLAHLYDRWG----------------------------------RMDKAAEFYELALKISAENGLEE---SDKVATI-----KNNLAM----------IFK---QLRKFERAEGYYCEALETFQRLDGSARVASVYNNLGVLYYSHMDVDRAQVMHERA--LAIRQNQMDPADLSQTFINLGAVYKAAGDFQKAEACVDRAKR |
8 | 4a1sA | 0.11 | 0.10 | 3.53 | 0.97 | MUSTER | | KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL----SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTKLMRDLGDRGAQGRACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSN------------GNSHIFLGQ-----FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ |
9 | 5a7dB | 0.09 | 0.07 | 2.67 | 1.07 | CNFpred | | ------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-----------DRLGEAKSSGNLGNTLKVMGRFDEAAI--------------CCERHLTLASEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE---------------------------------ALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA |
10 | 6gmhQ | 0.12 | 0.11 | 3.97 | 0.47 | HHsearch-2 | | DYDQAFQFASLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETSEDQDIADDVEAW-----IELAQILEQTDIQGLSAYGTATRILQE-KVQA-DVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAHDEHAINILREHPNYVDCYLDKGNFYEAKILKQTQSDTYSMLKRHQDRALAIYKQVRNDAKNLYAANGIGAVLAHKGYFREARDVFAQV--REATA-D-----ISDVWLNLAHIYVEQKQYISAVQMYENCLR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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