Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | YTTRLLAIISSTMSIFAGIIGIYFLLAIDYKKRVFRHQLIFFLILYDCIKALFLLLYPARVVAKASVYYDLNFCKVVGFFTALSIEGSDIAILSFAIHIALLVFKPNQTVKRGMSYEGGLFRYRYYVYAISILLPILLASLAFINGMGYEPLTNWCYMPTRPLWYRLVLSWIPRYLIIISIFVIYGCVYHHVTRQYSN |
1 | 2rh1A1 | 0.12 | 0.11 | 3.96 | 1.90 | SPARKS-K | | VGMGIVMSLIVLAIVFGNVLVITAIAKF-ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTK------NKARVIILMVWIVSGLTSFLPIQMHWYRATHEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLLK |
2 | 6me2A2 | 0.15 | 0.14 | 4.78 | 2.27 | FFAS-3D | | -ALACVLIFTIVVDILGNLLVILSVYR-NKKLRNAGNIFVVSLAVANLVVAIYPYPLVLMSIFNNGWNFGYLHCQVSAFLMGLSVIGSIWNITGIAIDRYLYI-HSLKYDKLYSSKNSLCYVLLIWLLTLAAVLPNLRA----GTLQYDPRIYSCTFAQSVSSAYTIAVVVFHFLVPMIIVIFCYLRIWILVLQVRGI |
3 | 6e59A | 0.16 | 0.15 | 5.04 | 2.87 | HHpred | | -LWAAAYTVIVVTSVVGNVVVMWIILA-HKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSA--------TATKVVICVIWVLALLLAFPQGYYSTETMPSRVVCMIEWPEHVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEGI |
4 | 6me6A | 0.17 | 0.17 | 5.46 | 1.70 | MUSTER | | PALSAVLIVTTAVDVVGNLLVILSVLRN-RKLRNAGNLFLVSLALANLVVAFYPYPLILVAIFYDGWAFGEEHCKASAFVMGLSVIGSVWNITAIAIDRYLYICHSMAYHRIYRRW------HTPLHICLIWLLTVVALLPNFFVGSEYDPRIYSCTFITASTQYTAAVVVIHFLLPIAVVSFCYLRIWVLVLQARMK |
5 | 5cxvA | 0.11 | 0.11 | 3.83 | 1.43 | CNFpred | | AFIGITTGLLSLATVTGNLLVLISFKVNTEL-KTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASQASVMNLLLISFDRYFSVTRPLSYRAK------RTPRRAALMIGLAWLVSFVLWAPAILFWQERTVLAGQCYIQFLQPIITFGTAMAAFYLPVTVMCTLYWRIYRETENRNIF |
6 | 5zbhA | 0.17 | 0.17 | 5.45 | 0.80 | HHsearch-2 | | FTLALAYGAVIILGVSGNLALIIIILK-QKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGWRP-NN-------RHAYVGIAVIWVLAVASSLPFLIYQVMTYKDKYVCFDQFPSDSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIF |
7 | 3uonA1 | 0.13 | 0.13 | 4.54 | 1.91 | Neff-PPAS | | VFIVLVAGSLSLVTIIGNILVMVSIKVN-RHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSN-AAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRREK |
8 | 5zbhA | 0.18 | 0.17 | 5.45 | 1.29 | HHsearch | | FTLALAYGAVIILGVSGNLALIIIILK-QKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGWRP-NN-------RHAYVGIAVIWVLAVASSLPFLIYQVMTYKDKYVCFDQFPSDSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNI- |
9 | 2rh1A1 | 0.12 | 0.11 | 3.96 | 1.69 | PROSPECTOR2 | | DGMGIVMSLIVLAIVFGNVLVITAIAK-FERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLT------KNKARVIILMVWIVSGLTSFLPIQMHWYRATHEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLLK |
10 | 5zbhA | 0.18 | 0.17 | 5.44 | 2.34 | SAM | | -TLALAYGAVIILGVSGNLALIIIILK-QKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLIINPRGW-RPNN-------RHAYVGIAVIWVLAVASSLPFLIYQVMTDKDKYVCFDQFPSDSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNI- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|