Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | LQLPCTIFQTQHRMNDYGARDMRCGDLTAEQLKRQFHLEKISIQVDPYTLKKLRSSSPLQYALDDFYRNEETITAEQCARLLFDEFRRESHAFAFYGPYRHLIIGMINHMQYGNGAPFKRPLLDTATREQILHNTTSNSSLLNIQATLKNNIDWKQAIYHEEKKWMLTKAVKDSRLPKFTHLKHYINGLGISVHDTWSTCITLEDLAVHKNTYYATLHYRIQDHFGLDEADISGPILSRLAIFRIWFVLQHYQRFGFKPYITSMDAKLEIS |
1 | 4fyeA | 0.10 | 0.09 | 3.28 | 0.64 | SPARKS-K | | ------------------------ITENIETYVTHLDLEPVPQHLAYFKDPMLDGKQVVVVNSQYDKHGRPVTDVIQEANNYIDNLVAAAKSLIDKDLRKNAIDEMAKTFKKSKADLFSSKK-SSANKDFLEQLAKVEGSLQQFTQAVAKASGHK----LKALDKEGHNIRSHNRRFKAPNSKEGEEQFIMYIPGNSSMARMIAGTRHSDG--TVTIHHDSFSGPGMPYSDFKGADDYKKLAIKAVTLINQEEVIQTLAQRQIDRMTNEDL |
2 | 6d2qA | 0.11 | 0.10 | 3.44 | 0.69 | FFAS-3D | | -QISIRVQMLDDTQQRAPGKAL------FDLVCSHLNLVEGDVWLDLLKPILKQIRRPKNIILRFFPPDHTQLLEELTRYLFALQIKHDLAC----GRLESSAALLVAHIVQSEIGDFDEVQCKQHLLNNKYIPE-----QDTLMDKIIGYHRKHVGQTPAESDYQLLEIA--RRLEMYGVRLHAHSGVLVFQGHTKINAFNVRKLSFKRKRFLIKLRCQDTLEFMMGSRDCCK---------VFWKICVEYHAF-FR------------- |
3 | 2pffB | 0.13 | 0.10 | 3.58 | 0.37 | HHpred | | -------------MDAYSPLTLSHGSLEHSQLQEQFNKI----------------LPEPTEGFAA---DDEPTTPAELVGKFLGYVSSLV-EPSKVGQFDQVLNLCLTEFEN-CYL-EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR-PFDKAYFEELRDLYQVGDLIKFSATLDFTQGLNILENTPDKDY--LLSIPISLIGVIQLAHYVVTKLLGFTPGELRSYLKHSQGLVTAVAIAET-------------------- |
4 | 6d4hA | 0.09 | 0.08 | 3.23 | 0.67 | MUSTER | | MFNPQLMIQTPKE----EGANV----LTTEALLQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYLIITPLDCFWEGAKLQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYM-----HWQEELIVGGTVKNSTGKLLQTMFQLMTPKQMHFKGYEYVSHINWNEDKAAAILEAWQR-QSVA---NSTQKVLSF |
5 | 5nczA | 0.09 | 0.07 | 2.66 | 0.71 | CNFpred | | --------------------------LTDDELFQY-----LLQLVQVLKYESY-----LDCELTKFL-----LGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRG------STHHMKVLMKQGEA----LSKLKALNDFVKVSSQKT---TKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTLLEEVCV-KPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDM------LTLQMIQLMDVLWKQEGLDLR-GCLPTGDRTGLI |
6 | 5swiB2 | 0.19 | 0.06 | 2.03 | 0.51 | HHsearch-2 | | -------------------------------------------------------------------------------NGFWDTFRTTFPLFALIEHYQRFLEGFLNSYRDTGFPKWLAPD------ERGMMPGT--LLDGIIADSACKDMT----PDLEGLFQAMLETA--SKADP-----LGING----------------------------------------------------------------------------------- |
7 | 5hamA | 0.09 | 0.07 | 2.55 | 0.70 | Neff-PPAS | | --------------------------YTENEITHLLTAQLDEKKFSVQPAITFRNTALTEEMLKDYTAK------GEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGK-----------------------------EAAVIPIEMGYGHWTVLVAKYDKKDN---QIILTFNDSLGNDEQTKQQTDQSACGVFTVDNGIKIAKG---QAILSTEESKGEKG |
8 | 1vt4I3 | 0.07 | 0.06 | 2.39 | 0.71 | HHsearch | | ----------------------EY-ALH-RSIVDHYNIPDSDDLIPPYLDQY----------FYSH------IGHH---LKNIEHPERMTLFRMVFLD----FRFLEQKIRHDSTASGSTLQQLKFYKPYDNDPKYE-RLVNAILDFLPKIEENICSKYTDLLRAIFEEAHKQVQRGGGGGGGGGGGGGGGGGGGGGGGGGG-GG-GGGGGGGGGGGGGGGGGGGGGGGG--GGGGGGGGGGGGGGG--GGGGGGGGGGGGGGGGGGGGG- |
9 | 1xfyO | 0.12 | 0.06 | 2.21 | 0.61 | SP3 | | -------------------------QLTIAEFKEAFSLFDKDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFKDGNG------YISAAELRHVMTNLGEKLTDEEVDQMIREADIDGDGQVN---YEEFVQMMTAK------------------------------------------------------------------------------------------------- |
10 | 5hamA | 0.08 | 0.06 | 2.47 | 0.80 | PROSPECTOR2 | | DYW-------------YTENEI------THLLTAQLDEKKFSV----QPAITFRNTALTEEMLKDYTAK------GEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGK-----------------------------EAAVIPIEMGYGHWTVLVAKYDKKDN---QIILTFNDSLGNSINYDGQKLPKLIDVFTVDNGIKIAKGQAIDAMFKQDAQWIRQQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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