>PF11678 (309 residues) TMPAMTVLEPKRFFQRMWTRLERDQDGRGKRSKVAVGAPPARVPVRDPFQRLTPGPDTDG TMLGTLVESGKNMALQASFKRNDIRFINGEQLKPAYEPDLYGGEVQKGGQVPGHADVAGL MRPDDVTKNVALGNQYAKFKWKDVATTDDPGAGIEPHKQAFNRGRPVDEQSHNWRIVPSR SLGSMLSAAATGGRYQTYVIQREETPDEVRKRMRTDADQLEANNYHSGVLLSSENHRWVT AMDVAIGQAVTLDDPDWRQLLLLMADWKMTSRAFKQMKECKAFNRLDKHTRDFLDACSTY YRTGQFPAE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TMPAMTVLEPKRFFQRMWTRLERDQDGRGKRSKVAVGAPPARVPVRDPFQRLTPGPDTDGTMLGTLVESGKNMALQASFKRNDIRFINGEQLKPAYEPDLYGGEVQKGGQVPGHADVAGLMRPDDVTKNVALGNQYAKFKWKDVATTDDPGAGIEPHKQAFNRGRPVDEQSHNWRIVPSRSLGSMLSAAATGGRYQTYVIQREETPDEVRKRMRTDADQLEANNYHSGVLLSSENHRWVTAMDVAIGQAVTLDDPDWRQLLLLMADWKMTSRAFKQMKECKAFNRLDKHTRDFLDACSTYYRTGQFPAE | |||||||||||||||||||
1 | 4nuyA | 0.08 | 0.06 | 2.57 | 0.93 | SPARKS-K | TTDKTLATDKEETYKVDFFS-PADKTKAVHTAKVIVGDEKTMMVNLAEGATVIGGSADPVNARKVFDGQLGSETDNISLGWDSKQSIIFKL-KEDGLIKFFNDSAR-NPETTNKPIQ---------EASLQIFNI--------------KDYNLDNLLENPNKFDDEKYWITVDTYSAQGERATAFSNTLNNITSKYWRVVFDT--------------KGDRYSS-------------PVVPELQILGYPLPNADTIMKTVTTAKELSQQKDKFSQ-KMLDELKIKEMALETSLTAINANAGVLKDCIE | |||||||||||||
2 | 3i3nB | 0.07 | 0.06 | 2.23 | 0.57 | FFAS-3D | ------------------------------------------------SEAEDFECSSHCSELSWRQNE----QRRQGLFCDITLCFGGREFRTEYFTPLLSGQFSESRSGRVERKWSSEPGPEPDTVEAVIEY--------YTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSN--------CVAIHSLAHYTLSQLALKAADIRRNFHKVIQDEEFYTLPFHLIRDWLSDLITV-----DSEEVLFETVLK---WRLSQKPTYLTRHVKPERLVNEVCVKLVADAVERHA---LRAE | |||||||||||||
3 | 4jqpA1 | 0.16 | 0.08 | 2.81 | 0.32 | HHpred | -----------------------------QCRPLVIGDAK---RLERANQIV--GGEMKIR----RI----EDASEARYEQGTIDCIDLGLIPDDLP--------------FGQLAIAGDAAYQYIKRAVELAQSG---KIDAICTA---PLNK----EALHGGHKYPGH---TEMLAHL------TGV-----DEVSMM---------------------GVNVTVGLEVIRTSVDHGTAFDIA-GKGVVDE-GSMLEALRQGAELATR--------------------------------------- | |||||||||||||
4 | 1nd4A | 0.11 | 0.09 | 3.14 | 0.69 | MUSTER | GSP--AAWVERGY------DWAQQTIGCSDAAVFRLSAQRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCVLDVVTEAGRDWLLL-GEV-------------------PGQDLLSSHLAPAEKVSIMADARRLHTLDPATCPFDHQAKHRIERARTRMEAG--------------------LVDQDDLDEEHQ------GLAPAELFARLKARMPDGEDLVACLPIMVENGRFSGFI--D---GRLGVAD--RYQDIALATRDIAEELGGEWADRFLVLYGIPDSQRIAFYRLLDEFF-------- | |||||||||||||
5 | 4c5sA | 0.11 | 0.05 | 1.75 | 0.57 | CNFpred | ---------------------------------------------------------------------------------------------------------------------------------------------------------MEALEKLLN-----------SNVSPKVPLRGSVSMDLIPL-KPSVIARIEVPAPEALSRVGLRPFKLQA-KEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVK------HPGQIESAELLEWLLRSSPFQEL | |||||||||||||
6 | 2pffB | 0.12 | 0.10 | 3.66 | 0.78 | HHsearch-2 | TLVKTKELITARMAKRPFDKKSNSA----LFRAVGEGNAQLVAIFGGQGNTDTYHVLVGDFSAETLSE-----LIRTT-LDAEKVFTQGLNILE-----WLENPS-------NTPDKDYLL-----SIPISCPLIGAKFTPGELRSYGHSQGLVTAWESFFVSVRKAITVCYEAYPNTSLP--PSILENNEGVPSPMLSI-SNLTQEQVQDYVNKTNHLPAGKQVEISLVNGAKN--------LVVGP-----PQSLYGLNLTLRKAKAPSGLDQKLKFSPFHSHLVPASDLINKDLVKNNVSFNAKDI | |||||||||||||
7 | 2tmaA | 0.08 | 0.07 | 2.91 | 1.02 | Neff-PPAS | ----MQMLKLDK--ENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEAD-------------VASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK----EAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI--------- | |||||||||||||
8 | 2dc1A3 | 0.10 | 0.02 | 0.60 | 0.38 | HHsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAASQQAV---KDYAEKILKIDLIVLSTGAFADRDFLSRVREVCRKT--GRRV---Y-IA---------------------------- | |||||||||||||
9 | 1zbmA | 0.11 | 0.09 | 3.14 | 0.99 | SP3 | ----------------------------HHSHKIRVAHTPDADDAFFYATHGKVDTWLEIEHVIEDIETLNRKAFNAEY---EVTAIS----AHAYALLDDKYRILSAGASVGDGYGPVVVAKSEISKRIAVPGRTANLLLKLAVEDFEPVEPFDRIIQAVLDEEEGQITYADYGLKCVLDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRA----------------RESIAFAIE-----------NPDEAIEYAKYSR--GLDRERAKRFAYVNDYTYNPESVDAALKKLYEAEAKGLI--- | |||||||||||||
10 | 6ef6A | 0.08 | 0.07 | 2.73 | 0.96 | PROSPECTOR2 | DVTIAQQALT------------HYDVSDNASLRLLNLSENATYLVEDGEHQVHRQDYHQPHEIESELDWLAALRTDSDVTVPTVVPARDGRRVVTVDPADVPRHVVHFEMVGGAEPDEESLTLDDFQTLGRITASEHSQRWTRPAGFGRFSWDWEHCLGDTPRWGRWQD---------------------AEGVGASETALLTRAQDLLHRKLEEYGSGPDRYGLRLALLVDSSTPQRTIFYDFGTAVSFIEHDPRLGEWQESWVAYRSRRELPAADEAMESATKAISYAAGSCALAERYLSSDGLRLT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |