Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MGTVIGAKRKIRERSMVSFFGAGQFIITIAALVAAIFAICACLRTTLAGPSGTLIWGCLALVVLLPLLGTVAYMAVQDEREDGVVADYARVVREGSVWEHQRQLLEDRSTFSGMRALAAMAVFEFICAIVACACMAAKPGTWQGSALFLATLALFMASAVVVVGTRRHSSVLVLSDAPVVGLSPDVRPAAPSGGQQAPVTAVPADACRSSADAPGTSVSSVVLDSTAASGAGVSGQQAALHLARENGASVGICA |
1 | 5uj9A3 | 0.13 | 0.12 | 4.21 | 0.72 | SPARKS-K | | SGNLVNRFSKELDTVDSMIPQVIKMFMGSLFNVIGACIIILLATPMAAVIIPPLGLIYFFVQRFYVASSRQLKRLESVSRS-----PVYSHFNETQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFASLFASRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMKEYSETEK--------EAPWQIQDMAPPKDWPQVGRREDLDLGGEKVGIVG-----RTGAGKS---SLTLGLFRIKESAEGEI |
2 | 4hkrA | 0.14 | 0.07 | 2.41 | 0.81 | FFAS-3D | | -TYLSWRKLQLSRAKLKA-------SSKTSALLSG-FAMVAMVEVQML----IAFAICTTLLVAVHMLALMISTCI-----------------LPNPHERLHWYIE-----TAWAFSTLLGLILFLLEIAILCWVKFYDLSRRAAVVLIPVMIIFMAFAIHF-------------------------------------------------------------------------------------------- |
3 | 5w7lA | 0.11 | 0.06 | 2.28 | 0.28 | HHpred | | ----------------------------------------------------DILGALFLLILTSPIIIATA-IFIYFKVSRDVIFTQARPGLNEKIFKMFKTMSDERDANGE-------------------LLPDDQRLGKFGKLIRLPQNVLKGDMS--FIGPRPLLVEYLPIYNETQKHRHD------------VRPGITGLAQVNGRNA------------------ISWEKKFEYDVYYAKNLSFML-- |
4 | 5ezmA | 0.13 | 0.12 | 4.12 | 0.59 | MUSTER | | AGIFPKLWTAMRAR-----FRPALMAGIWAIAIFVFFSI----------RSKLPGYIVPVIPALGILAGVALDRLSPRSWGKQLIGMAIVAACGLLASPVVATLNANHIPNSFYRAYAVWVAVAFVVMLLGIAVARLRRGVLPSVAVYAMGMYLGFTVALLGHETVGRPA-QIAQKLTPEMPLYGVQMLDHT-RHPLMMVGQADELTFGATVEPRVVPDVDSFTKLWKNGQPAMSPDTYLALAPTLSMYV-VAR |
5 | 3rkoB | 0.17 | 0.07 | 2.46 | 0.89 | CNFpred | | -----------LADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLM---TPEVLHLVGIVGAVTLLLAGFAALVQT----------------------------------DIKRVLAYSTMSQIGYMFLALGVQ----AWDAAIFHLMTHAFFKALLFLASGS----------------------------------------------------------------------------------------- |
6 | 2pffB | 0.15 | 0.15 | 4.87 | 0.49 | HHsearch-2 | | PTTAELVGKFLGYVSLVEPSKVGQFDQVLNLCL-TEFENCARAKRPFDKKSNSALFFEISCPLIG-VIQLAHYVVTAKLLGPGELRSYLKGHSQGLV-TAVAIAETDSWESFFVSVRKAITVLFFIGVR--CYEAYPNTS-LPPSILEDSDYVNKTNS-HLPAGKQVEISLVVVSGPPQSLYNLTLRKAKAPSGLDQSRIPFSE--------RKLKFSNFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD |
7 | 5cwpA | 0.13 | 0.11 | 3.95 | 0.74 | Neff-PPAS | | -RELIERAKEAAERAQEAAERTGDPRVRELARELKRLAQEAAEEVKRDPSS---SDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEESG-----------------------------DPEKREKARERVREAVERAEEVQRDPSGWLE |
8 | 2kmaA1 | 0.28 | 0.06 | 1.80 | 0.48 | HHsearch | | STMVYDACRMIRERIPEALAGPPNFL------------------SDDDPKKG--IW-----------------------------------------LEAGKALDYNGDTMEY---------------------------------------------------------------------R----------------------------------------------------------------------- |
9 | 5cwqA | 0.14 | 0.12 | 4.19 | 0.57 | SP3 | | SEEAERRLQEARKRS-EEARERGDLKELAEALIEEARAVQELARVACRGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIAL--AVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEARE--QGDDEVLALALIAIALAVLALAEVACCRGNK--EEAERAYEDARRVE----------EEARKVKESAEEQGDSEV-----------KRLAEEAEQLAREARRHVQECRGGWLEHHH |
10 | 5cwpA | 0.13 | 0.12 | 4.07 | 0.96 | PROSPECTOR2 | | MSSDEEEARELIERAKEAAERAQEAAERTELARELKRLAQEAAEEVKRDPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVR--LAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGD----PEVRELARELVRLAVEAAEEVQRNPSSEEVNEALKKIVKAIQEAVESLREAEESGDPEKREKARE-------------------------RVREAVERAEEVQRDPSGWLE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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