Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | VKSLEDLREELKGQRETFLSKLIESDGAFGFLQLIDFLRVIDTDLLLKVDGTKVEKAGVKVKAYLESIGIKGGSVEECLDNLMTKVSAITRGTVEGSAQSTDSEDLKTLLLKFSEDLKAEQERHGDKDESKELLKNLGVQRDELVKKFTEMSPSFLTSEDISGFLTVPEYGFPMDAAKWKKVEKKISDKLESSDITTDLKTLLAKLIEQREKMMDLLYGPIGHE |
1 | 2jo7A | 0.68 | 0.68 | 19.44 | 2.49 | SPARKS-K | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGHH |
2 | 2jo7A | 0.68 | 0.68 | 19.44 | 3.95 | FFAS-3D | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGHH |
3 | 2jo7A | 0.68 | 0.68 | 19.44 | 10.63 | HHpred | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGHH |
4 | 2jo7A | 0.68 | 0.68 | 19.44 | 2.67 | MUSTER | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGHH |
5 | 2ludA | 0.67 | 0.67 | 19.08 | 1.77 | CNFpred | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWAKVEGMIHGKLESSEVPANLKALVAELIELRAQMMALLYGPIGHH |
6 | 2jo7A | 0.68 | 0.68 | 19.44 | 5.29 | HHsearch-2 | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGHH |
7 | 2jo7A | 0.68 | 0.68 | 19.44 | 3.49 | Neff-PPAS | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGHH |
8 | 2jo7A | 0.69 | 0.68 | 19.44 | 8.55 | HHsearch | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGH- |
9 | 2jo7A | 0.68 | 0.68 | 19.44 | 2.20 | PROSPECTOR2 | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGHH |
10 | 2jo7A | 0.68 | 0.68 | 19.44 | 3.19 | SAM | | VKTLDVLRGELRGQREAFLSEIIKSDGPFTILQLVGYLRVVDTDLLLKVDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAKGGEALLSSMKTQHDELLKKFAALTPTFLTSEDISGYLTVPEYGAPMNAAKWKKVEGMIHGKLESSEVPANLKALVAELIELREQMMDLLYGPIGHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|