>PF11397 (379 residues) TIFVSIAAFRDKECITTLESLFTRAKYPRRVFLGISEERFETDVSCINSPKVLNSIDVNR SRTMRWKDLIPSAYDAASQQKHPKPTPVLHERRDEDIITCLLSADASDAPTSPGESMLNG CQVVTRHGHPDDARGPTYGRYITSLFYNNQDYYMVIDSHSRFVPDWDVKMIERARLMPTR GVLSHYPNGYTPEAPDAEINKSDVMCMCKGVILPDNIPKLGARWIAIRGHPVLQGFVAAG YIFGDAQFVRDVPFDPYLPFLFDGEEILYTVRLWTHGWDSYSPATALVYHNYMRVDAPRF FSVISRPGTKERRELERQTAIQRVLYFLKRRVLNTTQLVVTDDEAHRQNPAIVREEAHFG MGSLRSLADYWEFVELSDA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TIFVSIAAFRDKECITTLESLFTRAKYPRRVFLGISEERFETDVSCINSPKVLNSIDVNRSRTMRWKDLIPSAYDAASQQKHPKPTPVLHERRDEDIITCLLSADASDAPTSPGESMLNGCQVVTRHGHPDDARGPTYGRYITSLFYNNQDYYMVIDSHSRFVPDWDVKMIERARLMPTRGVLSHYPNGYTPEAPDAEINKSDVMCMCKGVILPDNIPKLGARWIAIRGHPVLQGFVAAGYIFGDAQFVRDVPFDPYLPFLFDGEEILYTVRLWTHGWDSYSPATALVYHNYMRVDAPRFFSVISRPGTKERRELERQTAIQRVLYFLKRRVLNTTQLVVTDDEAHRQNPAIVREEAHFGMGSLRSLADYWEFVELSDA | |||||||||||||||||||
1 | 2d7rA1 | 0.12 | 0.09 | 3.35 | 1.58 | SPARKS-K | NTSIIIPFHNESSLLRTVHSVLNRSPPELVAEIVLVDDFSD---------------------REHLKKPLEDYMALFPS-------------------------------------------VRILRT--KKREGLIRTRMLGASVAT-GDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGYDPGL-EIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKV---PAGVSLARNLKRVAEVWMDEYAEYIYQRRPEYRHLSAGD---VAVQKKLRSSL------NCKSFKWFMTKIAWDLP | |||||||||||||
2 | 2d7rA1 | 0.12 | 0.09 | 3.33 | 1.12 | FFAS-3D | NTSIIIPFHNEGWLLRTVHSVLNRSPPELVAEIVLVDDFSDRE-------------------------HLKKPLEDYMA---------------------------------------LFPSVRILRTK--KREGLIRTRMLGASVATGD-VITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGYDPGL-EIWGGEQYEISFKVWMCGGRMDIPC-SRVGHIYRKYVPY---KVPAGVSLARNLKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQK---KLRSSL------NCKSFKWFMT------- | |||||||||||||
3 | 2ffuA1 | 0.14 | 0.11 | 3.58 | 1.17 | HHpred | ATSVVITFHNEAALLRTVVSVLKKSPPHLIKEIILVDDYSNDPE--DGALL-------------------------------------------------G-----------------KIEKVRVLR--NDRREGLMRSRVRGADAAQA-KVLTFLDSHCECNEHWLEPLLERVAED-RTRVVSPIIDVINMDNFQ--YVGASAD--LKGGFDWNLVFKWDYMRQGNPVAPIKTPMIAGGLFVMDKFYFEELKYDMMM-DVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQH-PYTFPGGS--------GTVFARNTRRAAEVWMDEYK-N--------FYYAAVP----SARNVPYGNIQPFKWYLENVYPE-- | |||||||||||||
4 | 2d7rA1 | 0.12 | 0.10 | 3.64 | 1.46 | MUSTER | --------------------------------------KDWHDKEAIRRDAQEQGRPYPMTDAERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNHLKKPLEDYMALFP-SVRILRTKKREGLIRTRMLGASVATGD-VITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGFAVDRKWFWELGGYDPGL-EIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKV-PAGVSLARNLKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWF-------AWDLPKFY--PPV | |||||||||||||
5 | 2ffuA | 0.14 | 0.09 | 3.06 | 2.27 | CNFpred | ATSVVITFHNEAALLRTVVSVLKKS--PPHLIKEIILVDDYSNDPEDGA------------------------------------------------------------------LLGKIEKVRVLRND--RREGLMRSRVRGADAA-QAKVLTFLDSHCECNEHWLEPLLERVAED-RTRVVSPIIDVINMD----NFQYVGASADLKGGFDW--NLVFKWDYMT-PVAPIKTPMIAGGLFVMDKFYFEELKYDMMMD-VWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRK-QHPYTFPG--------GSGTVFARNTRRAAEVWMD------------------------------------------------- | |||||||||||||
6 | 1xhbA | 0.15 | 0.11 | 3.56 | 1.31 | HHsearch-2 | TTSVVIVFHNASTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLPLESYV-----------------------------------------------------------------KKLKVPVHVIRM--EQRSGLIRARLKGAAVSRG-QVITFLDAHCECTAGWLEPLLARIKH-DRRTVVCPIIDVISDDTF--EYMAGSDMT--YGGFNWKLNFRWYPVPKGDRTLPVRTPTMAGGLFSIDRDYFQEITYDAGM-DIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFGQIINAEVWMDEFKNFTKVDYG--DISSRLGLRRKLQ----------------------------------CKPFSWYLENIYPDSQ | |||||||||||||
7 | 6iwqA1 | 0.10 | 0.09 | 3.47 | 2.94 | Neff-PPAS | ------PLVLGPEFKQAIQASIKEFG-----FNMVASDMISLDRSVNDLRQEECKYWH--YDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKKEKLDEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPLIDVINGNTYEIIPQGGGDEDGYARGAWDWSMLWKRVPLTPQTKTEPYRSPAMAGGFAIEREFFFELGLYDPGL-QIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLGNPPPIYVGSSPTLKNYVRVVEVWWDEYKDYFYASRPESQALPYGDISELKKFREDHNCKSFKWF-------------------- | |||||||||||||
8 | 1xhbA | 0.14 | 0.11 | 3.68 | 1.97 | HHsearch | TTSVVIVFHNASTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLPLESYV-----------------------------------------------------------------KKLKVPVHVIRM--EQRSGLIRARLKGAAVSRG-QVITFLDAHCECTAGWLEPLLARIKH-DRRTVVCPIIDVISDDTF--EYMAGSDM--TYGGFNWKLNFRWYPVPKGDRTLPVRTPTMAGGLFSIDRDYFQEITYDAGM-DIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFGQIINAEVWMDEFKNFTKVDYGD--ISSRLGLRRKLQCKPYPDS--QIPRH--------------YFSLGEIRNVEQVFSYTANKE- | |||||||||||||
9 | 2d7iA1 | 0.12 | 0.09 | 3.25 | 1.42 | PROSPECTOR2 | NTSIIIPFHNEGWLLRTVHSVLNRSPPELVAEIVLVDDFSDREHL-------------------------KKPLEDYMA---------------------------------------LFPSVRILRTK--KREGLIRTRMLGASVATGD-VITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGYDPGLEIWG-GEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVP---YKVPAGVSLARNLKRVAEVWMDEYAEYIYQRR---------------------PEYRHLSAGDVAVQKKLKFYPPVEPP | |||||||||||||
10 | 1xhbA | 0.16 | 0.09 | 3.15 | 1.03 | SAM | TTSVVIVFHNASTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKLESY-------------------------------------------------------------------VKKLKVPVHVIRMEQRSGLIRARLKGAAVSR-GQVITFLDAHCECTAGWLEPLLARIKHDR-RTVVCPIIDVISDDTFEYM-AGSDMTYGGFLNFRWYPVPREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEITYDAGM--DIWGENLEISFRIWQCGGTLEIVTCSHVGHVFGQ------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |