Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | FIGRGKGLTPSGDDLLVGALAADQLLGMLPADTEGRIRKRLSQTPKPTTTVSEHYLACALEGLYNEPIHRLLHVLRQESEEKTIEECIKQIMAIGHTSGMDMLTGLTGA |
1 | 5cwjA | 0.07 | 0.07 | 2.98 | 0.71 | SPARKS-K | | ILKEARKSGTEESLRQAIEDVAQLAKKSQDSEVLEEAIRVILRIESGSEEALRQAIRAVAEIALEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEAQDPRVLEEAIR |
2 | 2nvoA1 | 0.13 | 0.11 | 3.80 | 0.65 | FFAS-3D | | ------------DPAL--LVLALIAKTAPNAADRKAAWDALPEVARTGTMLLHFLAFADALGGWGRLTRRGVANVYETADVDKLALWAVKYKARDGWSQADALR----- |
3 | 4c0oA4 | 0.12 | 0.09 | 3.26 | 0.26 | HHpred | | -------MNQLGQQLVSQLLHTCCFCLPPYT--LPDVAEVLWEIMQVDRPTFCRWLENSLKGLPHKQLTDFHKQVTSAEECKQVCWALRDFTRL--------------- |
4 | 2fbqA | 0.09 | 0.09 | 3.46 | 0.69 | MUSTER | | RQAKPEAQHATLEDLLHLLVSQAMAVKPRSGNDLSIFMRLLGLAFSQSQGHLRKYLEEVYG-KVFRRYMLLVNEAAPKLPPIELFWRVHFMLGA-SMSGIKALRAMAET |
5 | 4c9bB | 0.10 | 0.09 | 3.37 | 0.59 | CNFpred | | ---------VRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSK---FPQIGELILKRLILNFRCLTASKFVAHLINQNHEVLCLEMLTLLLERPTDDSVEVAIGFLKE |
6 | 6hwiA | 0.05 | 0.04 | 1.73 | 0.30 | HHsearch-2 | | ---------------------------GFDFAVIKELKTAA-SQYGATAPYTLAIVESVADNWTPTDWNTLVRAVLSGGDHSEFFENCRDTAKRNQQAGNGWDFDMLTG |
7 | 1q5zA | 0.14 | 0.13 | 4.38 | 0.66 | Neff-PPAS | | ----------ARETFLGVIRKALEPDTSTPFPVRRAFDGLRAEILPNDTIKSAALKAQCSDIELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTLSNVLDGLIGD |
8 | 5hvnA2 | 0.10 | 0.07 | 2.73 | 0.51 | HHsearch | | ----------PQREYIAGMAEVVKYAFIS-KDFYLWLDSNRDKILAKDSVTLIEMVKRSCQIKAQ---------VVAM------DTGARAILNFGHTFGHAIGVGMAQ- |
9 | 4yxxA3 | 0.12 | 0.07 | 2.60 | 0.76 | SP3 | | -----------------------------TVEEAVKRALKLKTKLGVSLEQALKILEVAAKGTTVEEAVKRALKLKTGVSLEQALKILKVAAELGT------------- |
10 | 2gfnA | 0.15 | 0.15 | 4.92 | 0.53 | PROSPECTOR2 | | IVDHDEGWSTGVHELLLAALRYRTILDEEGAGPIEKLRNITASILPLDERRLRVFLFFYAEGTARGEIAAFLARW-----RGVVRESVVAAQREGTVSTARCVDAAVRR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|