>PF11389 (275 residues) KSYITGGLGLQFDLGSLGDTIATDGLDASGSYKTTDSTGTQAGVLPRRAIIPENRLLSLQ HTTNGLISAKTSGAMTGLTLSLGYEQDFGKAFFWRVNAHYTRKVMGGDTSAKFLGQGFYD ITWDYHAIQVPVNVGIKLSVTEDTAFYIGAGVHYFNGGWSLAGSNRLNDVHNALVGAGVT NTTILGLVADGTDPSANWEKTTFQVSGVAPNWLIGAQTKISDKGSLYMEVETLFSFKYGI GHPRSAGGAQGLAPSVAYPQVLGGNQYRFGYKHEI |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | KSYITGGLGLQFDLGSLGDTIATDGLDASGSYKTTDSTGTQAGVLPRRAIIPENRLLSLQHTTNGLISAKTSGAMTGLTLSLGYEQDFGKAFFWRVNAHYTRKVMGGDTSAKFLGQGFYDITWDYHAIQVPVNVGIKLSVTEDTAFYIGAGVHYFNGGWSLAGSNRLNDVHNALVGAGVTNTTILGLVADGTDPSANWEKTTFQVSGVAPNWLIGAQTKISDKGSLYMEVETLFSFKYGIGHPRSAGGAQGLAPSVAYPQVLGGNQYRFGYKHEI | |||||||||||||||||||
1 | 4peuA | 0.06 | 0.04 | 1.86 | 1.08 | CNFpred | ----------------------------------------------REVKITKPGMYTFSGTWDGQILVDIGFEAVLVLDGVNITNTKSAPIYIKSAEKVKIELADKDNVLTDA-NKPNACIYSRDDITIKGNGNLTVNANFNNGIGTSNDLKITGGNITVKAFNNGLKGNGSVTIS--------------------GGNIDITAGADGIKVENKGYVNIT-GGTIKIRAKDAIDSV--------------------RSVSINNADVKVSVGGKD | |||||||||||||
2 | 2m06A | 0.18 | 0.09 | 2.97 | 1.05 | HHsearch-2 | -----------------------------------------------------------ATSTVGYAQSDAMNKMGGFN--LKYRYEEDSPLGVIGSFTYTEKSR--TAS---S-----GDYNKNQY--YGITAGPAYRINDWASIYGVVGVGY----GKFQTTEYP----------------------T----------YKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRI---RS---------------VDVGTWIAGVGYRF------ | |||||||||||||
3 | 2x27X | 0.11 | 0.08 | 2.78 | 1.08 | Neff-PPAS | -FIIRGGFATVDPDDSSSDIKLD-----------------------------------GAKQRGTKATVDS-----DTQLGLTFTYMFADKWGVELVAATPFNHQVDVKG----LLDGKLADIKQLPPTLLLQYYPMGGTNSAFQPYGGLGVNYTTFFDEDLA----------------------------SNRKAQGFSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDI----DTKASINGPSALGVNKTKVDVDVDPWVYMIGFGYKF | |||||||||||||
4 | 4wa0A | 0.13 | 0.13 | 4.51 | 0.83 | SPARKS-K | KGALNTNKNLTVENGSVGGDLTIDGISKGEVINQDSDSRCRDNNIVVRNIIYVEKSLKANRISPRSTNIDAKTIYVGQE----QLYGAGSYKFVQLFSDSNVKLAGPGVN-EVSTLASIRGTLEVITVTLSAVYCNSLVVRNGSRLILGAKLSIQNNGGTISYSSSFSYPSPPAEIDEIRNRDYTSGLLTTPLPADVGSNQLGSTADTPPQIVIYGESYINSTLQLHLISRGNITFV--GGGLTINGSIISLGSTFNINATYAGLTLKYQPSPPI | |||||||||||||
5 | 4fqeA | 0.14 | 0.09 | 2.96 | 0.62 | FFAS-3D | --------------------------------------------------------------------------------SIDYRHEMQDGHKDRLLISHRF----------ANGFGLSEVKWAQVSNGTEVVASYVYKFNSVFSIEPGFSLESGSSNNNYRPY--------LRGRANVTDDLSVALRYRPYFKRKGYTLTGNIDYTFLKDYTIGYELEYKKGTSYDITHNVKLSYKWD----------KNWKPYVEVGNVSRQTRYRVGVQYSF | |||||||||||||
6 | 1p4tA | 0.14 | 0.07 | 2.35 | 0.58 | HHpred | ---------------------------------------------------------------------LGSAKGFSPRISAGYRIN--D---LRFAVDYTRYKNYKA------------PSTDFKLYSIGASAIYDFDTQSPVKPYLGARLSLNRASVDLG------------------------------------GSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNT-------------------VKVRSGELSAGVRVKF | |||||||||||||
7 | 2x27X | 0.14 | 0.10 | 3.47 | 0.77 | MUSTER | AGIIRGGFAT-------------------VDPDDSSSDIKLDGAKQR----------------GTKATVDS-----DTQLGLTFTYMFADKWGVELVAATPFNHQ----VDVKGLLDGKLADIKQLPPTLLLQYYPMGGTNSAFQPYGGLGVNYTTFFDEDLA--------SNRKAQGF--------------------SSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMIDTKASINGPSALGVNKTKVDVDVDPWVYMGFGYKFHA---- | |||||||||||||
8 | 1lf6A | 0.08 | 0.04 | 1.59 | 1.07 | CNFpred | -----------------------------------------------------------------GYKLVNTDKKGRYRITKDIFTDVRNSLIMKAKFEALE--------------------GSIHDYKLYLAYDPHIKNQYNEGYVIKAMLMAKRDNVYTALSSNIGWKGYSIGYYKVN-DIMTDLDENKQMT---KHYDSARGN-----IIEGAEIDLTKNSEFEIVLSFGQS---------------------------------------- | |||||||||||||
9 | 3qraA | 0.21 | 0.11 | 3.59 | 0.96 | HHsearch-2 | ESSISI------------------------------------GYAQSRV--KEDG-------------YKLDKNPRGFNLKYRYE--FNNDWGVIGSFAQTRRGF--EESV--------LIDGDFKYY--SVTAGPVFRINEYVSLYGLLGAGHG----KAKFSSF---------------------------------GQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLD---D---------------VKVGTWMLGAGYRF------ | |||||||||||||
10 | 5ec6A | 0.10 | 0.10 | 3.75 | 1.00 | Neff-PPAS | RAVDTTSPNIVADTSTDREQRTFATQGGSITKPSPYIPGLMLTNQEILYQAPDGKYYDFGTYNTLIMPSSSTSARVLPNSHPMQPLDSGGKMIACCTNQTSTGMNALRLKSMQFGAWMSPSKTVSLFAGGTPAPTDTLQGVDTKATYEVIGLRVKNDAVTSSYETRGQVVTGSFLTVNFNTGKLGGTIVGNSEFGDSIEMRDVNVNGNQFSGTASSGHTGQVSGGLFAKEERFYSGTLEHPSGGEIGGTVNFGSNSPLNASFGGTRREYNAADTS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |