>PF11336 (524 residues) MKKKLICLLVAGALPGFAGAASTSAQIKALQAQLNALQAQVKELRTALASQHGAAGGGAS SQGAAAAAAAAPVDESSPDYGRASATLTHDDVTQMKQQIANQQLKVDALTDAANTGPIAG LSVTGYIDPTYVFNRAAGTSSFLFANHESNYNYFNSTFGDLYLDIKKTFGVGPMAPSAEI TLMPNRGNGITLLQNSRGNIGNNILNTAVVNVPLSATTTLVAGLVPSFGGYEVQQSNQML TLTHNLLYDFSDPGSYIGIGANYTKGNWAWKFLLGNEQYRTYGSVTQTGTNALGEPITTS NKVPTFTARVDYTWSSALDLGGSFNIGRQTLGSATTQSGATVYGPGGQASSPYGAFFFAE ADATYTLADIQYNAEIDYGQQQHAAFNGGRAQWYGLSLLAHRKFNVPVLGRMGATLRYDF LANGKNGGGGGGIALNGNGMDTADGFGIDADCLATSKANGGLGFECKGANRQDVALDLLF YPTQQITVKVEYRHDWANNKVFLRNDGSYSKSNDLLATQFIYSF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MKKKLICLLVAGALPGFAGAASTSAQIKALQAQLNALQAQVKELRTALASQHGAAGGGASSQGAAAAAAAAPVDESSPDYGRASATLTHDDVTQMKQQIANQQLKVDALTDAANTGPIAGLSVTGYIDPTYVFNRAAGTSSFLFANHESNYNYFNSTFGDLYLDIKKTFGVGPMAPSAEITLMPNRGNGITLLQNSRGNIGNNILNTAVVNVPLSATTTLVAGLVPSFGGYEVQQSNQMLTLTHNLLYDFSDPGSYIGIGANYTKGNWAWKFLLGNEQYRTYGSVTQTGTNALGEPITTSNKVPTFTARVDYTWSSALDLGGSFNIGRQTLGSATTQSGATVYGPGGQASSPYGAFFFAEADATYTLADIQYNAEIDYGQQQHAAFNGGRAQWYGLSLLAHRKFNVPVLGRMGATLRYDFLANGKNGGGGGGIALNGNGMDTADGFGIDADCLATSKANGGLGFECKGANRQDVALDLLFYPTQQITVKVEYRHDWANNKVFLRNDGSYSKSNDLLATQFIYSF | |||||||||||||||||||
1 | 2o4vA | 0.14 | 0.10 | 3.37 | 1.46 | SPARKS-K | --------------------------------------------------------------------------------------------GTVTTDGADIVIKTKGGLEVATTDKEFSFKLGGRLQADYGRFDGYYTNNGN--------TADAAYFRRAYLEFGGTAYR-----DWKYQINYDLSRNV-------GNDSAGYFDEASVTYTGFNPVNLKFGRFYTDFGLEATSSKWVTALERNLTYDIANDNVGTGIQASSVVGGM-AFLSGSVFSENNNDT--------------DGDSVKRYNLRGVFAPLHEVHLGLQYAYRDLESTNGGNDANRGLFGGSSAVEGLWKDDSVWGLEGAWALGAFSAQAEYLRRTVKAER-DREDLKASGYYAQLAYTLTGEPRLAWELFYRYDSIKVEDDNIVVDS------------------------ATREVGD-----AKGKTHTLGVNWYANEAVKVSANYVKAKTDK--ISNANG--DDSGDGLVMRLQYVF | |||||||||||||
2 | 2o4vA | 0.16 | 0.11 | 3.56 | 1.37 | FFAS-3D | ---------------------------------------------------------------------------------------------------ADIVIKTKGGLEVATTDKEFSFKLGGRLQADYGRFDGYYTNN--------GNTADAAYFRRAYLEFGGTAYR-----DWKYQINYDLSRN-------VGNDSAGYFDEASVTYTGFNPVNLKFGRFYTDFGLEKATSSKWVALERNLTYDIADWVNGTGIQASSVVGGMAFLSGSVFSE---------------NNNDTDGDSVKRYNLRGVFAPGNVVHLGLQYAYRDLEDSAVDTRGNRGLFGGSSAVEGLWKDDSVWGLEGAWALGAFSAQAEYLRRTVKAER-DREDLKASGYYAQLAYTLTGEPRLAWELFYRYDSIKVEDDNIV-----------------------------VDSATREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKI----SNANGDDSGDGLVMRLQYVF | |||||||||||||
3 | 4aq1A | 0.10 | 0.10 | 3.60 | 1.60 | Neff-PPAS | SNAPQNTVAFNKAEKVTSMFAGETKTVAMYDTKNGDPETKPVDFKDATVRSLNPIIATAAINGSELLVTANAGQSEVTFKDNTKRTFTVDVKKEPVLQDIKVDATSVKLSDEAVGGGEVEGVNQKTIKVSAVDQYGKEIKFGTKGKVTVTTNTEGLVIKNVNSDNTIDFDSGNSATDQFVVVATKDKIVYFKNASDTTPTSTKTITVNVVNVKADATPVGLDIVAPSEIDVNAPNTASTADVDFINFESVEIYTLDSGNRLKKVTPT------ATTLVGTNDYVEVNGNVLQFKGNDELTLLTSSSTVNVDVTADGITKRIPVKYINSASVPASATVATSPVTVKLNSSDNDLTFEELIFGVIDPTQLVKDEDINEFIAVSKAAKNDG----YLYNKPLVTVKDASGEVIPTGANVYGLNHDATNGNIWFDEEQAGLAKKFSDVHFDVDFSLANVVKTGSGTVSSSPSLSDAIQL------TNSGDAVSFTLVIKSIYVKGADKDDNNLLAAPVSVNVTVTKGS | |||||||||||||
4 | 2o4vA | 0.15 | 0.10 | 3.40 | 1.41 | HHpred | ---------------------------------------------------------------------------------------------------GGLEVA--------TTDKEFSFKLGGRLQADYGRFDGYYTNN-----G--N-TADAAYFRRAYLEFGGTAYR-----DWKYQINYDLSRNVG-------NDSAGYFDEASVTYTGFNPVNLKFGRFYTDFGLEKATSKWVTALERNLTYDIADWVVGTGIQASSVVGGM-AFLSGSVFSENNN--------------DTDGDSVKRYNLRGVFAPLNVVHLGLQYAYRDLEDSAVDTRPRMGLFGGSSAVEGLWKDDSVWGLEGAWALGAFSAQAEYLRRTVKAER-DREDLKASGYYAQLAYTLTPEEIGAWELFYRYDSIKVEDDNIVV----------------D---SA----------TREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKIS----NANGDDSGDGLVMRLQYVF | |||||||||||||
5 | 2o4vA | 0.15 | 0.11 | 3.75 | 1.61 | MUSTER | --------------------------------------------------------------------GTVTTDGADIVIKTKGG------------------LEVAT------TDKEFSFKLGGRLQADYGRFDGYYTNNGN--------TADAAYFRRAYLEFGGTAYRD-----WKYQINYDLSRNV-------GNDSAGYFDEASVTYTGFNPVNLKFGRFYTDFGLEKATSSKWVTLERNLTYDIADWVNGTGIQASSVVGMAFLSGSVFSENNNDTDGDSVKRYNLVFAPLHEPGNVVHLGLQYAYRDLEDSAVDTRIRPRMGMRGVSTNGGNRGLFGGSSAVEGLWKDDSVWGLEGAWALGAFSAQAEYLRRTVKAER-DREDLKASGYYAQLAYTLTGEPRLYKLDGAKFDTIKPENKEIGAWELFYRYDSIKVED----------DNIVVDSATREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKISNANGD----DSGDGLVMRLQYVF | |||||||||||||
6 | 4rjwA | 0.14 | 0.09 | 2.95 | 1.87 | CNFpred | -----------------------------------------------------------------------------------------------------------------------SFKLGGRLQADYSRFD------GFYTKNG---TADAAYFRRAFIELGGTAY-----KDWKYQINFDLSHNTGSS-------DNGYFDEASVTYTGFNPVNLKFGRFDPDFGLEKATSSWVTAPERNAAYELADWQDGMGAQVNSTLA-DMAYLSAGVSAKDADDS----------------DSVKQFNFRGVFAPMNVLHVGVNYAYRDLDDTAFDSRI-RPRLGMRGIATSSYKDDSVWGLEGAWAMGPFSAQAEYLARKLKADDNAYKDIKAKGYYAQLAYTLT-KEIGAWEVFYRYDNIKVEDDNVVAD------------------------------ATREVGDTKAKAHNLGVNWYVNDAVKISAAYVKAKTDKITNN----NGDDDGDGFVTRLQYVF | |||||||||||||
7 | 2o4vA | 0.16 | 0.11 | 3.68 | 2.47 | HHsearch-2 | ----------------------------------------------------GT-------VTTDG----------------ADIV-----------------IKTKGGLEVATTDKEFSFKLGGRLQADYGRFDGYYTNN--------GNTADAAYFRRAYLEFGGTAYR-----DWKYQINYDLSRNVG-------NDSAGYFDEASVTYTGFNPVNLKFGRFYTDFGLEKATSSKWVTLERNLTYDIADWVVGTGIQASSVVGGM-AFLSGSVFSENNN--------------DTDGDSVKRYNLRGVFAPLHVVHLGLQYAYRDLEDSAVDTRMGRGLFGGSSAVEGLWKDDSVWGLEGAWALGAFSAQAEYLRRTVKAER-DREDLKASGYYAQLAYTLTPEEIGAWELFYRYDSIKVEDDNIVV--------------DS-AT--------------REVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKIS--N--ANGDDSGDGLVMRLQYVF | |||||||||||||
8 | 2o4vA | 0.14 | 0.11 | 3.69 | 2.05 | Neff-PPAS | --------------------------------------------------------------------------------------------GTVTTDGADIVIKTKGGLEVATTDKEFSFKLGGRLQADYGRFDGYYTNN--------GNTADAAYFRRAYLEFGGTAYR-----DWKYQINYDLSRNV-------GNDSAGYFDEASVTYTGFNPVNLKFGRFYTDFGLEKATSSKWVALERNLTYDIADWNVGTGIQASSVVGMAFLSGSVFSENNNDTDGDSVKRYNLRGVFAPLHEPGNVVHLGLQYAYRDLRPRMGMRGVSTNGGNDAGSNGNRGLFGGSSAVEGLWKDDSVWGLEGAWALGAFSAQAEYLRRTVK-AERDREDLKASGYYAQLAYTLTGEPRLYKLDGAKFDTIKPENKEIGAWELFYRYDSIKVEDDNI----------VVDSATREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKISNANGDD----SGDGLVMRLQYVF | |||||||||||||
9 | 2o4vA | 0.16 | 0.11 | 3.63 | 3.32 | HHsearch | ----------------------------------------------------GT-VT----TDGAD-------IV-----IKTKGG-----------------LEVA------TTDKEFSFKLGGRLQADYGRFDGYYTNN--------GNTADAAYFRRAYLEFGGTAYR-----DWKYQINYDLSRNVG-------NDSAGYFDEASVTYTGFNPVNLKFGRFYTDFGLEKATSSKWVTLERNLTYDIADWVVGTGIQASSVVGGM-AFLSGSVFSENNN--------------DTDGDSVKRYNLRGVFAPLHVVHLGLQYAYRDLEDSAVDTRMGRGLFGGSSAVEGLWKDDSVWGLEGAWALGAFSAQAEYLRRTVKAER-DREDLKASGYYAQLAYTLTPEEIGAWELFYRYDSIKVEDDNIVV--------------DS-AT--------------REVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKIS--N--ANGDDSGDGLVMRLQYV- | |||||||||||||
10 | 2o4vA | 0.14 | 0.10 | 3.32 | 2.22 | PROSPECTOR2 | ---------------------------------------------------------------------GTVTTDGADIVIKTKGGLE-----------------------VATTDKEFSFKLGGRLQADYGRFDGYYTNN--------GNTADAAYFRRAYLEFGGTAYRD-----WKYQINYDLSRN-------VGNDSAGYFDEASVTYTGFNPVNLKFGRFYTDFGLEKATSSKWVTALERDIADWVNDNVGTGIQASSVVGGM-AFLSGSVFSEN--------------NNDTDGDSVKRYNLRGVFAPGNVVHLGLQYAYRDLEDSAVDTRIRPRMGMGSSAVEGLWKDDSVWGLEGAWALGAFSAQAEYLRRTVKAER-DREDLKASGYYAQLAYKPENKEIGAWELFYRYDSIKVEDDNIV-----------------------------VDSATREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKI----SNANGDDSGDGLVMRLQYVF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |