>PF11294 (371 residues) FYGDIPVFRGFTSLMDPALYAPLPDDWNIGVADIVDSTKAIAAQRYKAVNMAGAAVIAAV TNALEGREFPFVFGGDGASFAVAPSDLDAAREALAATATWVREDLDLTMRVALVPVSAIR AQGLDVRVARFGPSANLSYAMFSGGGLAWADAAMKRGEFAVAEAPAGTQPDLSGLSCRFE VIPASRGLILSVLVMPARGADPQLFRKVIEDIIDLVERSPDGARPVPSQGPPLKWPPQGL DYEARTRRGKSLLARRATVLAYTLFVYLVMRFDLKVGGFVPNIYRRQVVENSDFRKYDDG LRMILDCTPQLERTLSDRLAAAAREGTVRYGLHRQDAAMMTCFTPSVLRSDHVHFIDGAR GGYASAATALK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | FYGDIPVFRGFTSLMDPALYAPLPDDWNIGVADIVDSTKAIAAQRYKAVNMAGAAVIAAVTNALEGREFPFVFGGDGASFAVAPSDLDAAREALAATATWVREDLDLTMRVALVPVSAIRAQGLDVRVARFGPSANLSYAMFSGGGLAWADAAMKRGEFAVAEAPAGTQPDLSGLSCRFEVIPASRGLILSVLVMPARGADPQLFRKVIEDIIDLVERSPDGARPVPSQGPPLKWPPQGLDYEARTRRGKSLLARRATVLAYTLFVYLVMRFDLKVGGFVPNIYRRQVVENSDFRKYDDGLRMILDCTPQLERTLSDRLAAAAREGTVRYGLHRQDAAMMTCFTPSVLRSDHVHFIDGARGGYASAATALK | |||||||||||||||||||
1 | 4guaA | 0.16 | 0.13 | 4.50 | 0.61 | SPARKS-K | LSRRFPVFGTQLDL-QTGRTRVVPVNRNLPHALVGPVKKFLNQFKHHS--------VLVVSKIAPRKRIEWIAGADGFLVFINIGHFQQCEDHAATLKTLSRSALNCGGTLVVKSVTALARK---FVRVSAARPDCVMYLIFRQNSLNCVISSVYEGTRDGV----GAAPS---YRTKRENIDCQEE---AVVNAANPLGRPGVCRAIYKRWPTSFTDSAETGHAV---GPDFRKHPE-------------AEALKLLQNAYHAVADLVNEHNIKSAGKDLEVSLNCLTTALDRTDAD----VTIYCDKKWKERIDAALQLKESDEDMEI-----DDELV--WIHSTTKGKLYSYFEGTK--FHQAAKDMA | |||||||||||||
2 | 6r3qA2 | 0.12 | 0.09 | 3.04 | 0.83 | FFAS-3D | ---------------------------SILFADIVGFTKMSANKSAHALVGLLNDLFGRFDRLCEETKCEKITLGDCYYCVAGYCCIEMGLGMIRAIEQFCQEKEMVNMRVGVHT-------G---TVLCGILGMRRFKFDVWSNDVNLANLMEQLGVAKYLDDRYEMEDGKVTELKTYSQTYSKNHDSGGVIFAS----------------IVNFSEFYEENYEGG---------------------------KECYRVLNELIGDF-----------------DELLSKPDKIKTIGATYMAASGLNEFAKEMMRVVDDFNNNMKLRVGFNH---GPLTAGVIGTTKLLYDIW-----GDTVNIASRM- | |||||||||||||
3 | 5m27A | 0.16 | 0.09 | 2.85 | 0.41 | HHpred | --KYMPA-RVIYLINQGITVEPQLVEKIIFFSDILAFSTLTEKLPVNEVNRYFSICT-RIISAYGG--EVTKFIGDCVMASFTKEQGDAAIRTSLDIISELKQLHLLYTGIGLSY-------G-HVIEGNMGSSL-KMDHTLLGDAVNVAARLEALTRYALAAGVKKCCQA--QWTFI--NLGAHQEAIEVYTVNEAQYYDTLQITQLIRQTLE------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 5ugqA | 0.14 | 0.12 | 4.16 | 0.62 | MUSTER | PATGNPSGIEAALGVFQTLPKRVHERFDLVGFDVASSRPAIWCNS---------DADNDRLRAEPQVDYS-------EGVAHIENETKQFVGRCVDKGKNFLAHVGTVNVAKDL-DAIRAALGD----------DKLTYLGYYGTGSAYAEEFPQRGAVDPNADPIEAELRAKGFQDAFNNYAADCAKNAGCPLGADPAKAVEVYHSLVDPLVD--PDNPRISRPARTKD-PRGLSYSDAIVGTIALYSPNLWQHLTDGLSELVDDTLLALADYRRGRYNNSGDARVAINCVDQP------------PVTDRDKVIDEDRRAREIAPFSYGKFTGDAPLGTCAFWPVPPTS-TVVVSTTH-AGVDLANQLR | |||||||||||||
5 | 4lgyA | 0.12 | 0.09 | 3.33 | 0.87 | CNFpred | --------------------------GEAMSIGERAPVALL-----DFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKT--NEQREMTSP-----LSLVISAFARVEDVRHTL--------------TPQLST-----------EDNALLLIDLGK--GHNALGATALAQVYRQL-----GDKPADVRDVA--QLKGFYDAMQALVAARKLLAWHDRGGLLVTLAEMAFAGH-----CGVQVDIAALGDDHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLDCVHYLGQALA-GDRFVITAN----DQTVFSESRLRVWWAETTWQMQ | |||||||||||||
6 | 5m27A2 | 0.18 | 0.09 | 2.82 | 0.48 | HHsearch-2 | ---------------NPLTVEPQLVEKIIFFSDILAFSTLTEKLPVNEVNRYFS-ICTRIISAYGG--EVTKFIGDCVMASFTKEQGDAIRTSLDIISELKQPLHLLYTGIGLSY-------G-HVIEGNMGSS-LKMDHTLLGDAVNVAARLEALTRPYFTAGKKCCQA---QWTFI--NLGAHQEAIEVYTVNEAQKYDTLQITQLI---RQTLE---------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5ugqA | 0.13 | 0.11 | 3.87 | 0.68 | Neff-PPAS | -------GIEAALGVFQTLPKRVHERFDLVGFDVASSRPAIWCNSDADNDRLRAEPVDYSREGVAHIENETKQFVGRCVDKGKNFLAHVGTVNVAKDLDAIRAALGDDKLTYLGYIGSAYAEEFPQRVRAILDGAVDPNADPIEAELRQAKGFQDAFNNYAADCAKNAGCPLG-------------------------ADPAKAVEVYHSLVDPLVPDNPRISRPARTKDPRGLSYSDAIVGTIALYSPNTDGLSELVDNRGDTLLALADYRRDSHGRYNNSGDARVAINCVDQP------------PVTDRDKVIDEDRRAREIAPFSYGKFTGDAPLGTCAFWPVPPTSPTVVVSTTHDAGVDLANQLR | |||||||||||||
8 | 4yusA2 | 0.13 | 0.07 | 2.35 | 0.58 | HHsearch | -------QPSIFKIISQGNIRPKAVEKIVFFSDIVSFSTFAEKLPVEEVSVVNSSVCTAIITRQGG--EVTKFIGDCVMAYFDGDCADQAIQASLDILMELEILRVLYSGIGLAK-------G-KVIEGNIGSE-LKRDYTILGDAVNVAARLEALTRQQLVSEKNSAT---KSWNFIDSELKGKSESIDIYSIDNEMTRKSSGGLEIARNIGHYLER-V------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3f0hA | 0.10 | 0.08 | 2.78 | 0.78 | SP3 | PYFRTTEFSSTLENEKFLEYAKAPEGSKAVFT-------------------CSSTGSEAVVNCFTK--------KDKVLVIDGGSFGHRFVQLCEIHEVALKLEHGKK-----LTKEKLYEDNQNFTGLLVNVDETSTAVLYD----TIGEFCKKNNVSAFLADPFNNECGADVITG-SQVLACPPG--ISVIVLA---------PRGVERVEKSKVRTYFDLKDALKERGQTPFTPANERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELTTANAYDIFLKLKDE-----YGTIFRVGHALTHEDNTTLVNAFKDLQKRNLL------------------------------------------- | |||||||||||||
10 | 5fjmA | 0.10 | 0.08 | 3.02 | 0.87 | PROSPECTOR2 | MVRRDGKFVESKSRALFVESTALPSESDVVIGEVAGEQSGRAYSEIFPLHHYGKILWRGMNEKI-GADTSYRTQG-RVEALADEKALDRAQEWIKTAKETAGFDVPLNTRIAFEEARYAKQIGVKIYVRGIETAGGKISDVVTEKGAIWSRLFMGN------MGVDLPTLNVYLSQQRVSGVPGAPRGNVHLYAVAPRIFTSSIVKDSFLLGPKFMHLLGGGELPLEFSIG--------------------------------EDLFNSFKMPTSWKLDEKSPFE-------------QYRIATATQNTEHLDAVFQRMKTVFEKSQIVE--------RWGAVVSPVKEYPGLVINTATVWGMTEGGEVTK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |