>PF11281 (314 residues) SCYQTLSRIIFNLAEQHDLRNVHVITNDKLPVVRYHTEAYCFQTAEQILFFYNPAYHEAQ NLFTEDNYRARKLRIVFLATGDEIRSNSANFHTRVRELLNELMPKLPIKDLKVKIRDHQH LSYDLFAKSKGNKETYGYKLRAIAPRYKARKCDLPENVSSLTYVTVSLPLSRKLKQGLLP DSATDFSPLYQHLEDNFLKAAANKQLTRLAMIANGLTPLVRNSKFEKLDSKAEVQMIGFD PNATEQQVIRRWDADNLVEAAHFTIVAGAKDCDDSGYGRFMNNVEAALKTFAAEIGLDPE REDLVVRFHQHISY |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SCYQTLSRIIFNLAEQHDLRNVHVITNDKLPVVRYHTEAYCFQTAEQILFFYNPAYHEAQNLFTEDNYRARKLRIVFLATGDEIRSNSANFHTRVRELLNELMPKLPIKDLKVKIRDHQHLSYDLFAKSKGNKETYGYKLRAIAPRYKARKCDLPENVSSLTYVTVSLPLSRKLKQGLLPDSATDFSPLYQHLEDNFLKAAANKQLTRLAMIANGLTPLVRNSKFEKLDSKAEVQMIGFDPNATEQQVIRRWDADNLVEAAHFTIVAGAKDCDDSGYGRFMNNVEAALKTFAAEIGLDPEREDLVVRFHQHISY | |||||||||||||||||||
1 | 4on1A | 0.07 | 0.05 | 2.28 | 0.58 | SPARKS-K | MDY----EDLAGVLSKISNTEHTIMLQEWTTSIKAIH-GVEIEESNRPVYLFEGQDKDSINAILSQSYRLQRDLIDYIVYKDK---------ERMAEIANYYQNHYL---DKIVVCNNIRIDITKAIGNNPFKGLP-------IKDYPTE----ATYPATLEFMLIKEKSLKFLIDSHKGGASDYEVSALESFQNYLRSWVKGQDKKPYILLRDGTTFGYASGIGVLNNPRGNFEVAAISTTSSSHPYTEHVDNEQDLMYTWY----SPQVTPNHLSADNWVRMLECIQK------------------------ | |||||||||||||
2 | 1q9jB | 0.12 | 0.10 | 3.38 | 0.60 | FFAS-3D | --VDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLILREGGAELTLY--LHH-------------------CMADGAVLVDELFSRYTDAVTTMEAVLAQRGIRKAVTRLWLSKQQTSDLMAFGREHRLSLNAVVAATEWQLRNTP--------HVPIPYVY-PVDLRASYLAEIGPNTDIVDLASDIVATLRADLANGGLPPLVFCTDATSFPTMRTPPGLEI--EDIKGQFYCSISVPLDLYSCAVYAG---QLIIEHHGHIAEP-----GKSLEAIRSLLCTVPSE-------------------- | |||||||||||||
3 | 3p1vA | 0.14 | 0.08 | 2.60 | 0.38 | HHpred | --------------------------------------------------------------------------------------------------------------------------VDYI--FTGDATQQAIYLDELLPTWAGRQHHLSELEGNGQIIVKDL-ASKQCI--YQ----TSFSSLFQE----WLSTDEAKET-AKGFENTFLLPYVEVTLYSPRKK-TATYKHIVRPDDIITPHR-YLQSGNEKDCIDVAILAEGYTEKE---DVFYQDAQRTCESLFSYEPFRS-KSKFNIVAVAS--- | |||||||||||||
4 | 2r66A | 0.12 | 0.10 | 3.63 | 0.59 | MUSTER | VYVKEVSLALAEM------VQVDIITRR----------------------IKDENWPEFSGEIDYYQE-TNKVRIVRIPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFVTTHYDGGLAGVLLKNIKGLP--FTFTGHSLGAQKMEKLNVNFKEMDERFKFHRRIIAERLTMSYADKSTSQERFGQYSH--DLYRGAVNVEDDDKFSVIPPGTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIA-QNKELQDKANLVLTLRGIENPFSRAGQEEKEILGKIIELIDNNDCRG-----KVSMFPLNSQ | |||||||||||||
5 | 4kzkA | 0.07 | 0.05 | 2.29 | 0.79 | CNFpred | PWFQDEWRFAEQAAKDKHFTLVKIAAPSGE------KVSTALDSLAQGVIICAPDVKLGPGIAA--KAKRYGMKLMSVDDQ-HMGISAYRIGRQVGDAIAAEAKRRGWNPAEVGVLRLAYDQLPTAR----------ERTTGAVDALKAAGFA------AANVVDAPEMT-----------------ADTEGAFNAANIAFTKHNFRHWVAFGSNTVGAVRAGEGRGIGT-DDMIAVGINGSQ---VALNEFAK-PKPTGFFGSILLN--------PRLHGYDTSVNMYDWITQNRTPPPLVLTSGTLITRANE | |||||||||||||
6 | 3p1vA2 | 0.14 | 0.07 | 2.39 | 0.41 | HHsearch-2 | ----------------------------------------------------GVSHITPHRY-LQSGNEKDCIDVAILAEGYTEKE--DVFYQDAQRTCESLFSYEPFRS-KSK-----------------------FNIVAVASPSTDSGVSVPREQWKQTAVHSHFDTSDRYL------TTSRVK--------SVHNALAG-------------IP-------------YEHIIILANTDVY-GG-GGIYNS--------YTLTTAHHP----F-------KPVVVHEFGHSFGGL---------------- | |||||||||||||
7 | 3l49A | 0.12 | 0.10 | 3.41 | 0.63 | Neff-PPAS | DWDLKAYQAQIAEIERLGGTAIALDAGRN-----DQTQVSQIQTAQKPAIIEQLGNLDVLNPWLQKINDAG-IPLFTVDTATPHAINTSNNYSIGAELALQMVADLG---------GKGNVLVFN-----GFYSVPVCKIRYDQMKYVLEAFP-------------DVKIIEP---ELRDVIPNTIQSAYSNVTDMLTKYPNEGDVG--AIWACWDVPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVADP------ESPAGAVAAQQ----------PSEIGKLAVQNVARHLAGQEVKPFTFAPAVLITKE | |||||||||||||
8 | 2ewlA | 0.09 | 0.02 | 0.61 | 0.37 | HHsearch | -----------------------------------GS---------------HMAEPQRHKILCVCCKCDGRIELTVESSAEDLRT----LQQ----LFL---STLSFVCPW-CATN-Q--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 3x0vA | 0.13 | 0.10 | 3.42 | 0.57 | SP3 | I---PSMKRTFNLFKRTGMPLIKYYLDGENTPQLYNNHFFAKGVV-------DPYMVSVANGGTVPDDVVDSVG-------EKLQQAFGYYKEKLAEDFDKGFDELM-LVDDMTTRE--------YLKRGGPKGEAPKYDFFAIQWMETQNTGTN---------LFDQAFSESVIDSFDFDNPTKPEWYTSLLVDAMKETLVHK---------------VQNNK--------RVEAISIDLDAPDDGNMSVKIGGKDYSGYSTVFNTTA--------------LGCLDRMDLRGLNLHPTQADAI----RCLHY | |||||||||||||
10 | 4dgkA | 0.07 | 0.06 | 2.53 | 0.93 | PROSPECTOR2 | MLAIRLQAAIEELFALAGKQ-----LKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLE----------------------AQIQQFNPRDVEGYRQFLDYSRAVFKEGYLG------TVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLTSSIYTLIHALEREWGVWFPRGGTGALVQGMIKLFQDLGGESHMETTGNKIEAVHLEDGRRFSNSLFVLYFGLNHHHDQLAHHTVCFGPRLAEDFSLYLHVPHLGTANLDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |