Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | YAIEQYDTHGFLKAPIWLWLGWLFLARAWIVFVVAGVSRDSGSQILSFVYPGNTALYLGLAAGVPSIALMWLISLRHPERRWVNALCHIGRWVTLLTAVAQFLQTGYHVYLQHGAFHWTNALTLLILLWLILYVYRSRSVRDCF |
1 | 5xtci | 0.11 | 0.10 | 3.73 | 0.86 | SPARKS-K | | LMIMMAMAMKLGMAPFHFWVPEVTQGPLTSGLLLLTWQKLAPISIMYQISPSLNV-NLLLTLSILSIMAGSWGGLNQT----------QLRKILAYSSITHMGWMMAVLPY-NPNMTILNLTIYIILTTTAFLLLNLLLLSRTW |
2 | 6eyuA | 0.11 | 0.10 | 3.72 | 0.87 | FFAS-3D | | YEAITAGGFG----SQPFILAYIITAMISGLLFLY---------LPRKLDVPQKFGIIHFFIVVWSGLMYTNFLNQSFLSDYAWYMWMVSTPLILLLLGAEFTLVITGLLAQAQGSITPYYVGVLLLLGVVYLLASSDGLARAY |
3 | 2pffB | 0.11 | 0.09 | 3.25 | 0.35 | HHpred | | NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFPGHSQGLVTAVAIAETDSWESFVSVRKAITVLFFIGVRCYETSLPPSILEDSLENLTQEQVQDYVNKTNSHLPAGKQVE--------------------------- |
4 | 3p5nA | 0.12 | 0.12 | 4.15 | 0.85 | MUSTER | | FPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIIVALV----KNLLNYLFSMGDPGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMKVIIVPFNIIKGIVISIVFILLYR--RLANFL |
5 | 3rkoB | 0.10 | 0.08 | 2.84 | 0.95 | CNFpred | | ----------------PTPVSALIHAATMVTAGVYLIA-----RTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQ---TDIKRVLAYSTMSQIGYMFLALGVQAWD--------AAIFHLMTHAFFKALLFLASGSVILACH |
6 | 5tj5A | 0.14 | 0.14 | 4.73 | 0.51 | HHsearch-2 | | YFFSLADIIGNF-IPGLLFMQGIFGYLSVCIVYKWAVGKPAPGLLDDELYPHQAKVQVMALVCIPWLLLVKPLHFKFDI--MIHQVIHTIEFCALSLAHAQLSSVLWTMTIQFGFRGFVGMTVALLTCAVLVLMLHSLRLHWVE |
7 | 3p5nA | 0.12 | 0.11 | 3.94 | 0.86 | Neff-PPAS | | -----LPPYLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSM---GDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMKVIIVSGIIPFNIIKGIVISIVFILRRLANFL |
8 | 3d6yA | 0.10 | 0.08 | 3.06 | 0.59 | HHsearch | | KALRYYDKIDLFKPAYVIHLDLIKSLKYIG------TP---LEEMKKAQDLEMEEL-F-------AF----YTEQERQIREKLDFLSAL---EQTISLVKK---RMKRQMEALGEVFVNASYSKLKKFIESADGFTNNSYGAT- |
9 | 6a2jA3 | 0.10 | 0.08 | 2.80 | 1.04 | SP3 | | --------------------------------PLQIGKKMQFHMIGILI----YSYIVVLLLFVWIIVAAVHAITSYKDQKQIFWGWISCLIFITLQALSGIMIVYSELALGFALAHSFFIACLFGVLCYFLLLIARFRYES-- |
10 | 5kbwA | 0.12 | 0.11 | 3.95 | 0.67 | PROSPECTOR2 | | SSIKKFPQASFLKYDPSEIPALIVSFLGVGMFVVLVK-----DILFFLMKSGDPVGIAMNAVLGMSFVGIAGLIYHRNKSRATAIKGMIVATLFATAFALGLNALIVPLYFEAPFELYLKFFPFILDSVVTFFVY--KKVSSIL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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