Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | MESVQTRLCASSNQFAPFKKRQLAVPVGSVNSLTHTITSTTVTSVIPKNYQEKRQKICHIISSLRNTHLNFNKIQSVHKKKLRHLQNLLRKKNEIIAELVRKLESAQKKTARRSISKPAHWKYFGVVRCDNTIRTIIGNEKFVRRRLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGSRVIVYENSRRFEFINPNEIVSGKRLIIKHLQDESQSDINAY |
1 | 1l9vA | 0.10 | 0.09 | 3.41 | 0.55 | SPARKS-K | | KKDMDKFYDSIIYGIAPPPQFKKRYNTNDNSRGMN-------------FETIMFTKVAMLICEALNSLVTQANVSNVLSRSIRHLENLVIRKEDLLLKSTLIAIGQSKEIETTITAEGGENAAFTMWKLT-----------YLEHQLMPILDQNFIEYKVTLNEDKSDVHVKELVAELRWQYNKFAVITHGKGHYRIVKYSSVANHADRVYATFKSNVKTGVNND |
2 | 5t5sA | 0.08 | 0.06 | 2.25 | 0.77 | FFAS-3D | | ---------------------------------------------QTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQ------------PLVILEMESTAKALNEALKLFKMHSPQTSLFTVDNEAGKIKASEWVQQVSGLMGKDVSAQATGKN--VGCLQELQLATSFAQLRL----------- |
3 | 2c7jB | 0.12 | 0.07 | 2.36 | 0.27 | HHpred | | -----------------------------------------------------LDAFSRVVEQKKGAYLSNDEINALQNKRLDVVNRLTSNASSIVANAYRALVAERPQVF-----NPGGPCF-----------H-------------------------HRNQAACIRDLGFILRYVTYSVLAGLRETYQA--LGT-PGDAVASGIKKMKEAALKIANDPN--- |
4 | 5cwpA | 0.14 | 0.13 | 4.43 | 0.57 | MUSTER | | MSSEEARELIERAKEAAERAQEAAERTGDLARELKRLAQEAAEEVKRDPSSSDVNEALKLIVEAIEAAVRALEAAERTPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAER-----TGDPEVRELARELVRLAVEAEEV--QRNPSSEEVNEALKKIVKAIQEAVESLREAEES----DPEKREKARERVREAVEREVQRDPSGW |
5 | 4v3fA | 0.07 | 0.05 | 2.15 | 0.55 | CNFpred | | -------------------------------------------------GAHRATYLRAIAAKITEKKDHFVKLETIDSGPFDEAVLDIDDVASCFEYFAGQAEALDGKQKAPVTLPMERFKSHVLRQPLGVVGLISPNYPLLMATWKIAPALAAGCTAVLKPSELASVTCLEFGEVCNEVG---------PGVLNILTGLGPDAGAPLVSH-------PDVDKI |
6 | 2pffB | 0.19 | 0.18 | 5.76 | 1.11 | HHsearch-2 | | MDAYSTRPVLLV-PTASFFI-----ASQLQEQFNKILPEPYVSSLVESKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITRIMAKRPFDKKSNSALGEGNAQLVAIFQGN---TDDYFEKFSAETLSELITTLDAEKVFTQGLNILEKDYIPISCPLIGVIQAHYVVTAKLLGFTPLKSQGLVTAVAIITVIGVRCYEAYPNTS |
7 | 2yfaA | 0.09 | 0.08 | 3.06 | 0.67 | Neff-PPAS | | --------------------DTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTS-RAEMTVQGADIVKRSDALYQIQLER- |
8 | 3nmdA | 0.15 | 0.04 | 1.19 | 0.40 | HHsearch | | ----------------------------------------------------------GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ-LQNELDKYRSVIR------------------------------------------------------------------------------------------------------------------ |
9 | 5cwmA | 0.10 | 0.09 | 3.48 | 0.53 | SP3 | | LKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVR----VAELLLRIAKESGSEEALERALRVAEEAARAKRVLELAEKQGDPEVARRAVELVKRVAELLIARESGSEEAKERAERVREEARELQERVKELRER----- |
10 | 5hamA | 0.07 | 0.07 | 2.90 | 0.73 | PROSPECTOR2 | | DYWYTEAITFRNTALTEEMLKDYTAKGEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEAAEMGYGYDKKDNQIILTFNDSLGNSINYDGQKLPKLIDKTLGNLPNKPIIIDEQTKQQTDQSATVDNGIKIAKGQAILSTEE-----SKGEKGLRLREHHAQILTDAMFKQDRQQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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