Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | LYAMGRIPICECGYVKLFEPGVNTSGNSQHLADWYTPSHIIHGFLFYGLAWLLFRKKPLSMRLSFAVLIEAAWEILENSPLIIDRYRTATMALGYTGDSILNSAMDTVFMALGFLFAARVPVWLTVVIAIFFEIFTGWLIRDNLTLNVVMLVWPVEAIKQWQN |
1 | 4tkrA | 0.06 | 0.06 | 2.41 | 1.04 | SPARKS-K | | VLSFIPLDIGSSFSISL----------GMIPMYVIAIRRGFAGLLWGLLHFLTKAYILMPSQAIIEYILAFSFIAFSGVF--SKQVRSNLAANQIEWAWGTMIIGGVARYFWHYVAGVLFWGAYAAQLFSIVMNGASCLGTVLVSGIIISILLKTSPKLFLP- |
2 | 1vt4I3 | 0.20 | 0.17 | 5.48 | 1.30 | HHsearch-2 | | EYALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHHLK--------NIEH--PERMTLFRMVFLDFR------FLEQKIRHDSTAWNAS-GSILNTLQ-----QLKFYKPYICDNDPVNAILDFLPKIEELICSKYTDLLRIALMAEDEAIKQVQR |
3 | 5xj5A | 0.10 | 0.10 | 3.60 | 1.00 | SPARKS-K | | VIAKLKGVDLRNVGSGNVGATNVTRALGKKYGVLVFFLDFLKGFIPALIAVKSFGIDSWVLTFTGLASVLGHMVVFAVSPSVALFSFLVWLGIFYV------SLASITATISAFLFLFVAGYPVNVLFMAIVIGALIIYRRENINRLLTGREHRFGTLEVL-- |
4 | 6n3tA2 | 0.09 | 0.07 | 2.54 | 0.73 | FFAS-3D | | -----------------------------------AIIGGLAIAGALGIMRLVAEFTPVHFFAQPVVTLIGLGIAIDYGLFIVSRFREEIAEGYDTEAAVRRTVMTSGRTVVFSAVIIVQGFLKSITYAIIASVMLAAILSITVLAAALAIL----------- |
5 | 4o6mA2 | 0.12 | 0.09 | 3.01 | 0.23 | HHpred | | ---------------------------TSVTPNQITVFSFFLSLVGSALFL--LN--SY-LTTLLAGVIIQLHSIIDGCDGEIARLKFMESKYGAWLDGVLDRYSDFII-VFSITYVLSANPVYIIGFAAFASL-MIAYTGDKFVA----------------- |
6 | 4rfsS | 0.13 | 0.12 | 4.05 | 0.69 | MUSTER | | VPFLGYIPF---GPFSMT----------IGLT-RDGLLIGGFWGLITFVRAFTWPSSPVAPLIFTNPLISILPRLLM-AGSLYLWGRHRSMRQAMQVAAGCAALTNTVLVLGLVFLFYQTPLGYVLMISLFTNGIPELILDVLVAPLIAMPLRRQWERLKPQ- |
7 | 4u95A | 0.07 | 0.06 | 2.28 | 0.87 | CNFpred | | --------------------------------PFSVMLVVPLGVIGALLAATFRLTNDVYFQVGLLTTIGLSAANAILIVEFAKDLMDKEGK--GLIEATLDAVRMRLRPILMTSLAFILGVMPLSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFS |
8 | 1vt4I3 | 0.05 | 0.04 | 2.01 | 0.92 | HHsearch-2 | | VDHYNIPKTFDSDD-------LIPPYLDQYFYSHIHLKNIEHPERMTLF-RMVFL----DFRFLEQKIDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI----------FE--EAHKQVQRGGG |
9 | 6n3tA2 | 0.09 | 0.08 | 2.99 | 0.74 | Neff-PPAS | | --------------------------GTVIAAALPAIIGGLAIAGALGIMRLVAEFTPVHFFAQPVVTLIGLGIAIDYGLFIVSRFREEIAEGYDTEAAVRRTVMTSGRTVVFSAVIIVAGFLKSITYAIIASVMLAAILSITVLAAALAILGPRVDALGVTT |
10 | 1vt4I3 | 0.14 | 0.11 | 3.75 | 0.86 | HHsearch | | EYALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFYSHIGHHLK--------NIE--HPERMTLFRMVFLDFRFSGSILNTLQQLKFPYICDND--PKYERLVNAILDFLPKIEENLI--------------------CSKYTDLLRIALMAEDEAIKQVQ- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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