Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | TDPTTGATTSTDAPSTNYLNRLTPNMFLTILAVVVIIALIIIFVQSSSTGNNSSSPNTPNANMGFVNPLNATMRANPFMNTPQRQML |
1 | 2xeqA2 | 0.13 | 0.11 | 3.98 | 1.10 | SPARKS-K | | NLPQSAATPALSN-----------PHLTAVLGLSLLLILLSRGEDLQSSDNQWTEVFLRIPQAALAKPINLVSLFSRYVDRQKLNLL |
2 | 5awwG | 0.06 | 0.03 | 1.53 | 0.53 | FFAS-3D | | ------------------------YTLVILFYLGVAGLLVYLVLVQEPKQGAGDLMGGSADLFSARGVTGGLYRLT----------- |
3 | 6et5z | 0.19 | 0.11 | 3.70 | 0.22 | HHpred | | -----------RTASWKLWLILDPRRLTALFVYLTVIALLIHFGLLSTDRLNWWEFQRGLPKA------------------------ |
4 | 3hgfC | 0.09 | 0.09 | 3.46 | 0.90 | MUSTER | | -KKIENIVTKIDKKKYIYKKLLNEIAEIEKDKTSLEEVKNINMSYGKSLNKLFLEKIKKKSEIKSMEKYIKDLDEIK-EQSPKAEMN |
5 | 4citA | 0.13 | 0.06 | 1.99 | 0.48 | CNFpred | | -----------------------KTLFAYTKASVAMADAFISCWDEKY--------------SNLIRPETVINQH------------ |
6 | 2axtm | 0.38 | 0.14 | 4.09 | 0.73 | HHsearch-2 | | ---------------------MEVNQLATALFVLVPSFLIILYVQTESQQKSS---------------------------------- |
7 | 3hgfC | 0.07 | 0.07 | 2.84 | 0.85 | Neff-PPAS | | -KKIENIVTKIDKKKYIYKKLLNEIAEIEKDKTSLEEVKNINMSYGKSLNKLFLEKI-KKKSENMIKSMEKYIKDLDEIKEQSPKAE |
8 | 5awwG | 0.12 | 0.09 | 3.22 | 0.47 | HHsearch | | -------------------MDLLYTLVILFYLGVAGLLVYLVLVQEPKQGAGDLMGG---SADLFSGGLYRLTVILGFAALAVIGL- |
9 | 3zifR | 0.14 | 0.14 | 4.72 | 0.75 | SP3 | | FQPQMGAAAGASQDYSTRMNWFSGPDMIHDVNNIRDAQNRILMTQSAIGGIGSRQFVEEFVPAVYLNPYSGPDQFIRHYNVYSNSVS |
10 | 1jvr | 0.14 | 0.14 | 4.70 | 0.51 | PROSPECTOR2 | | HMGQIHGLSPTPIPKAP--RGLSTHHWLNFLQAAYVVEIINILVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEPYVEPTTTQCF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|