Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | LVGTWSSKSRKVITGPDFYDPVNEKFKEPSHTGISYSFTEDGYYEEAYYRAVANPSSPDCPKGIMQWQHGKYSKEPNGSLILTPFEVDGRQLLSSPCAGDQSAYTRYNQSELFKQYEVQTDKFHNVLRLNLYQFDGTPVIPMYLVYRPPQMLPTQTLNPTAQKPAATGKSKRDISDEETIEPLNKHAFVKRSEPDTMDKWWWFGLFMTSVGGVA |
1 | 6n2cA2 | 0.11 | 0.09 | 3.20 | 0.96 | SPARKS-K | | SSDKIIFNNNITVTTRNMYSSSDITLRSDNNRKADNIIVKNGSFINLMYTITFNGNNNRLESNSLLFSDGTISLSGKDEIVANALFCDTLDIR----NGSSNL-VTINEFAYFNKLNIWTDK------MVLKS--NSK-------------LFGGDIEIRNDGILSADVGTVVYQIPYPTIPAIIEEIKKNTFPTNWI---------------- |
2 | 4gzvA | 0.14 | 0.08 | 2.86 | 0.46 | FFAS-3D | | LKGIWQLCHYVSES--------PDVPGALKPSNTFKVLSDDGRI----VNFTIIPGADA-----IITGYGTYKQLTDDSYKESI------EKNIHLPLDNQDNILEFENDYLHLKYFIKSDLNGNELNTWYYE--------TWKRVEPAKF-PEDIVR-------------------------------------------------------- |
3 | 5y31B | 0.13 | 0.09 | 3.24 | 0.39 | HHpred | | ------------------WDHVEKTFDNITGTSTVVPIVIE----TQLYVIVAQLFGGS---HIYKRDSNKFIIEIRKPNDIETFKIENNWYFVVADKAGFTTIYKWNGNGFY-SHQ-SLHAWYRDTDVEYLEIVRTPQTPHLILSSS-SQRPVIYQW--------NK--ATQLFTNQTDIPNMEDYAVKH----------------------- |
4 | 5xxzA | 0.14 | 0.14 | 4.62 | 0.67 | MUSTER | | DTGLVTNQAQLAVVHRNQPQ-KNQDFFISPNEDGNKDFVNNVYNDLTVNVYAKDDHQKQTPIWSSQAGASAIESTAWYGITARGSKVPGDYQYV-------VTYRDEHGKEHQKQYTISVNDKKPITQGRFDTINGVDHTPDKTKALGSSGIVREEVFYLAKKNGTEGKDGITVSDNKVYIPKNPDGSYTISKRDGVTLSDYYYLVEDRAGNVS |
5 | 5jmdA | 0.13 | 0.06 | 1.94 | 0.83 | CNFpred | | ---------------------------------RSVFFVDNTYFVIVDEVSGS-----AKGSVNLHYQM-TFLTQFGSNMKLQCFGPEGMSMKKEP----GWCSTAYRKRYKRMNVSFNVKK-NAVRYITVIYPV------------------------------------------------------------------------------- |
6 | 2m4lA | 0.23 | 0.09 | 2.93 | 0.67 | HHsearch-2 | | IIGYWSTGIE----GT----------------HKLLSFDEDGTGSFGIYS---NAT-------PISFQMFDYKIE-EGRIYIYDYP-DEKT----P-----------------YYLDCKISG----TTLKVET-GSE----------------AGTYK------------KQK----------------------------------------- |
7 | 6n2bA1 | 0.09 | 0.07 | 2.88 | 0.84 | Neff-PPAS | | --GSFLPNYKFTVRGGSIYSGERIQTQGEVNGGGNSIEIKEIMYIQNKLVFNGPNTNPNTLNANKIYTGGGMELNGYGYYKANEIYSDGEVQVKNYGNFEIGSIGIVKKLTVTDNGRTTIKSGATLYCDQLEVRN-----NGRVFIEAGATLVTRAISISGGTIEGPGTRQVNPSATFPSYPPFIDDIKNF----------------------- |
8 | 5y31B2 | 0.09 | 0.06 | 2.12 | 0.67 | HHsearch | | ---------------ITEFAKSQD-LPYQSLSI--DTFSYLN----DEYVVIAQPFTGKC--IFLEWDHKTFRNTGTSTVVCKPIVIETQLYVIVAQLFGGSHIYKRDSANKFIKIQD--INVQAPRSFTHVSINKRNF----LFASSFK--GNTQIY---------------KHV-------------------------------------- |
9 | 1q56A | 0.11 | 0.08 | 2.88 | 0.76 | SP3 | | ----------------GSEKVIIEKAAGDAEA---IAFDGRTY---MEYHNAVTKSEKALTQGLILWSGKGLERSDDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEA----PITGSSPLGA----------------TQLDTDGAMERLSVAHKLPKAYSTGFIELHLVEDALNNPTILSAK--------------- |
10 | 4qnlA3 | 0.07 | 0.06 | 2.32 | 0.78 | PROSPECTOR2 | | GVKRLSKEPNTRPAPVKQSNANDYGVFGEVLSGTQFSKTADSHNGASVGYLAVPRGLKKNTYIALNYNPLTVGVNAAGNCTFNNANPTDWVVFGDTTREDKGFKVWEYTSSSTGAHTFTVESDDGTATTSAFSTTVATSGYVGLYNPSA---SSQLFTLEYSTIGNVGLEHHHHH--------------------------------------H |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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