Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | INNKNVIHIDLEESYLDFNLDGTVFKVPLGDEARLEMVKAGEEYQAAADELEKIKIDDPENMTTDQYIALSEKTTELLRIAINKTLTDEKAYDYIYNKTKDSIRVAKVYYMVQSEIEAYFGVNTAVDTDYRSQYLQKVSAKKK |
1 | 4uosA | 0.14 | 0.13 | 4.29 | 0.86 | SPARKS-K | | ----------------GDNEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLENGEDKKAKEMAEKILKMVIELAEKILKKKEMAEKILKKVKELEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLE |
2 | 5n77A2 | 0.07 | 0.06 | 2.29 | 0.91 | FFAS-3D | | ------------------------------ETKIEQLADEIENIYSDLEQLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILRDIESLLPHNESLFQQAAMGFINIEQNR-- |
3 | 4p1mA | 0.15 | 0.10 | 3.31 | 0.31 | HHpred | | -------------QPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKERT----RVTNTEQLVFALNISYELAQEKA--------KTRD------YAASMEQRIRMLQQTIEQALLEQGRIT---------------- |
4 | 6nqmA | 0.08 | 0.08 | 3.03 | 0.80 | MUSTER | | SKQVNMELAKIKQKCPLYEANGQAV----PKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIE--HWKKIVKTQEELKELLNKMVNLKEKIKELHQQTAEFLVKSKHRDLTALCKEYD |
5 | 1t72A | 0.15 | 0.09 | 3.08 | 0.51 | CNFpred | | --------------------------------IVSDLERMGDEAENIAERAILLAEEPPLK-PYVNINFMSEIVKEMVNDSVISFIQDTLLAKKVIEK---DDTVDELYHQLERELMTYVLEDPR------------------ |
6 | 4p1mA | 0.14 | 0.10 | 3.34 | 0.50 | HHsearch-2 | | -------------QPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKERT----RVTNTEQLV------FIAALNISYELAQ-E--KAKT-RD--YAASMEQRIRMLQQTI---------------EQALLEQGRITE |
7 | 1w9rA | 0.08 | 0.06 | 2.48 | 0.86 | Neff-PPAS | | ----------------------------KVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRN----EEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEK |
8 | 3hnwA1 | 0.11 | 0.05 | 1.76 | 0.58 | HHsearch | | --------------TAEVILGGKVIKLGG-YESEEYLQRVASYINNKITEFNKEE----SR-SAELR--TD--YLNIADDYFKAK-----K---------------------------------------------------- |
9 | 5cwmA1 | 0.08 | 0.06 | 2.47 | 0.69 | SP3 | | ----------------------------DPEDELKRVEKLVKEAEELLRQAKEKGSEED----LEKALRTAEEAAREAKKVLEQAE-KEGDPEVALRAVELVVRVAELLLRIAKESSEEALERALRVAEEAARLAKRVLELAE |
10 | 1w9rA | 0.04 | 0.03 | 1.78 | 0.67 | PROSPECTOR2 | | GSHMPE---------------------KKVAEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEE---DKVKEKP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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