Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | APSAGGPGPAKRRRTEEPAGPGSEAASSLDNLTRSPAAGAFTSVVVVAAGCALHVALDDVDLVLEPEPTSVLQVSLGDRTLMLVPEALLGSGVQRLWGQGLEQGAFLSAPEESVVLEQGFFRVVVPEIAAQEEANREDVGTEFLSAGMDAAADSVVGLRPSAGKMSGPNSEVLVPEPSPQAPNPSPERSSPYYDYTLDFYLQEPLPDSPLQPLPPSPSPGPHERPQRPHDPGRAVRR |
1 | 2nbiA | 0.15 | 0.15 | 5.09 | 1.10 | MUSTER | | QPSDLNPSSQPSECADVEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRC-CATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEEC-PLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTM-LPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDTDPAVNR |
2 | 1dgiR | 0.07 | 0.07 | 2.94 | 1.64 | Neff-PPAS | | PNMEVTHVSQLTESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDK |
3 | 2nbiA1 | 0.17 | 0.16 | 5.30 | 1.09 | PROSPECTOR2 | | QPSDLNPSSQPSEPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQ------PTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQFTPSPDGSPPICSPTMMPSPPSPSPSAVTVPLTP-APSSAPTR |
4 | 6h9cZ | 0.12 | 0.11 | 3.71 | 0.80 | SPARKS-K | | -------QTQEYTLSHTGGLLGSSK---VTTASNQTAPQRETAIISFEV----------------PRKFSEIEYVGQRDATRFVPRTTEEITGTANDDTVVQLQANIQPIAGEEDMQDYPVVVAYAQV----EIADVNYATDEVTLATDPADGDTVKLWPI---MGDGEVQFRLVNQFGQEEGRVYPWATPLYRWEINLHGVTWQENETVEVLLDAPQAITWEDADYPEGQYVSTFE |
5 | 1s1iB | 0.14 | 0.12 | 4.20 | 0.42 | FFAS-3D | | --HTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDP---YKYRLREEIFIANEGVHT------GQFIYAGKKASLNVGN-VLPLGSVPEGTIV----SNVEEKPGDRGALARASGNYVIIIGHNPDENKTR--VRLPSGAKKVISSDARGVIG------VIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVPNHQHIGKASTISRGAVSGQKARR |
6 | 2hyxA2 | 0.13 | 0.05 | 1.77 | 0.27 | HHpred | | ---------GKVVNYGGGGAYDEGS-AVFDYPPSLANRGRWQGATSDGNDAAIKLNYHDVYIVVGGT--GTLTVVRDGKPATPIS------GPP-------TTHQVVAGLASEVRPSKGL--------------------------------------------------------------------------------------------------------------------- |
7 | 5xxzA | 0.05 | 0.05 | 2.48 | 1.05 | MUSTER | | DHLPQTLGKTPIKLKLTDGNYQTKETLKDNLETQSDTGLVTNQAQLAVVHPQSQLTKNQDFFISPNEDGNVAFKGLENLTVNVYAKDDHQKQTPIWSSQAGAGASAIESTAWYGITARGSKVPGDYQYVVTYRDEHGKEHQKQYTISVNDKKPITQGRFDTINGVDHFTPDKTKALGSSGIVREEVFYLAKKNGRKFDVTEGKDGITVSDNKVYIPKNPDGSYTISKRDGVTLSDYY |
8 | 3zx1A | 0.13 | 0.04 | 1.32 | 0.69 | CNFpred | | ----------------------------------------GEFVLINGQKPKIKLAT-NERIRIYNATARYLNLRIQGAKFILVGTD----------------GGLIEKTIEELFLSPASRVEVLIDA------------------------------------------------------------------------------------------------------------- |
9 | 6fanA | 0.20 | 0.04 | 1.22 | 0.60 | HHsearch-2 | | ----------------------------------------CEASAFIVNGDKEELFLERVDKL-IPTEEKIKRLELVDHRILLERE------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 1maeH | 0.05 | 0.05 | 2.23 | 1.52 | Neff-PPAS | | -----AGSGSILGHVNGGFLPNPVAAHTSFSRIAKGKRTDYVEVFDPVTFLPIDIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPASPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQSSDGIYLLTSEQSAWKLHAAAKEGLVGQTSSQISLGHDVD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|