>PF10561 (305 residues) RINGVKGHQNRTNSIIYCPPLLRTNPQKDKCSAIIYFGGDVQDIPEKMESNRDNKNYIKW NLENTALLLRESFPQSHIIVVRPMRMEYSTFSCFDNFVRGNNAGIPDHTPMHFSLQHLEE LLINLTKKLTKPILDQEFLHKLLAASSSKTLAGDVSCKQNNVDILQSDIYNSTSGDSNEG DLTDLLWWRENLNLDKASLKLIGFSKGCVVLNQFIYEFHYYKTLTPDDSTMMRLVSRITD MYWLDGGHGGGKNTWITSRSLLETLCRLCINVHVHVTPYQIQDDHRPWIRKEEKAFTDLL KRLGA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RINGVKGHQNRTNSIIYCPPLLRTNPQKDKCSAIIYFGGDVQDIPEKMESNRDNKNYIKWNLENTALLLRESFPQSHIIVVRPMRMEYSTFSCFDNFVRGNNAGIPDHTPMHFSLQHLEELLINLTKKLTKPILDQEFLHKLLAASSSKTLAGDVSCKQNNVDILQSDIYNSTSGDSNEGDLTDLLWWRENLNLDKASLKLIGFSKGCVVLNQFIYEFHYYKTLTPDDSTMMRLVSRITDMYWLDGGHGGGKNTWITSRSLLETLCRLCINVHVHVTPYQIQDDHRPWIRKEEKAFTDLLKRLGA | |||||||||||||||||||
1 | 4zwnA | 0.08 | 0.07 | 2.60 | 0.80 | SPARKS-K | YKVQTTVPELQYEKFGYMFWPVQNGTNEVRG-RVLLIHG------------------FGEYQFRLMDHLSLN----GYESFTFDQR------GAGVTSPGRSKG---VTDEYHVFNDLEHFVEKNLSECKAKGIPGKHKNELHPHTMYNKPTQIIAPLLAK-FSPRVRIDTGLDLKGITSDKAYRAFLGSDPMSVPLYGSF-----------RQIHDFMQRGAKLYKNE-NNYIQKNFKPVIIMHGQ----DDTIN-DPKGSEKFIRDPSLKLYHS-IFSLETD--KVFNTVFNDMKQWLDKHTT | |||||||||||||
2 | 3cn7A | 0.15 | 0.09 | 3.11 | 0.72 | FFAS-3D | ------------------EPLILDA--PNADACIIWLHGLGADRTD---------------FKPVAEALQMVLPSTRFILPQAPSQGGWVMPSWYDILAFSPARAIDEDQLNASADQVIALIDEQRA----------------------------------------------------------------KGIAAERIILAGFSQGGAVVLHTAFRRYATFDDLALDERHKR------IPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVG-----WHDYPMGHEVSLEEIHDIGAWLRK--- | |||||||||||||
3 | 1jjfA | 0.13 | 0.09 | 3.08 | 0.38 | HHpred | DQVRNGVPRGQVVNRVYLPPGYS---KDKKYSVLYLLHGIGGSEND----------WFGGRANVIADNLIAEGKIKPLIIVTPNTNA-AG---PG--------------IADGYENFTKDLLNSLIPYIESNY---------------------------------------------------------SVYTDREHRAIAGLSMGGGQSFNIGLTNLDFAYISAANYPNERLFPDKLKLLFIACGTND---SLGFGQRVHEYCVANNINHVYWLIQGG---GHDNVWKPGLWNFLQMADEAGL | |||||||||||||
4 | 1qlwA | 0.10 | 0.08 | 3.07 | 0.67 | MUSTER | LSLSPKYDAHGTVTVMYVRYQIPQRAKRYP---ITLIHGCCLTG-MTWETTPDGR-------MGWDEYFLRK--GYSTYVIDQ----------------------SGRGRSATDISAINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVASKLAIKLDGTVLLSHSQSG----IYPFQTAAMNPKGGECPKPEDVKPLTS-VLVVFGDHIEEFPRWAPRHAFIDALNAAGGKGQLMSLP--VHGNS-MMQDRNNLQVADLILDW-G | |||||||||||||
5 | 1gklA | 0.14 | 0.09 | 3.01 | 0.95 | CNFpred | ---------NGTKSLNVYLPYGYDP---KKYNIFYLMHGGG----------ENENTIFSVKLQNILDHAIMNGELEPLIVVTPTFNG--GNCTAQNFY----------------QEFRQNVIPFVESKYST------------------------YAESTTPQGIAASR---------------------------MHRGFGGFAMGGLTTWYVMVNCL----------------DYVAYFMPLSGDYWYGNSPQDKANSIAEAINR-EYFVFAATGSED-------IAYANMNPQIEAMKALPH | |||||||||||||
6 | 5ikkA2 | 0.11 | 0.07 | 2.36 | 0.39 | HHsearch-2 | KITNMPILRD-NNQVLCSSNF------FQKDNLLVIVHESPRVLGNVLNLND--SLLVDPVSLYVEWAMQQDW---GLIDINIPEVD----------------------ILSEVKELCLYVWDNYVE-----------------------------------------------------------------LSISKNIFFIGGGKAVHGLVNLASSRN--------------VSDRVKCMVNFLGTEPLVGLKTASEEDLPTWYYRHS-LVFVSSSNECWKKAKRA------------KRRYGR | |||||||||||||
7 | 5x6sA | 0.12 | 0.09 | 3.27 | 0.72 | Neff-PPAS | SLQQVTGDNPTNVGMYIYVPNNLASN----PGIVVAIHYCTGTGPGYYGDS------------PYATLSEQY---GFIVIYPSSPYSGGCWDVSSQATLTHNGGG--------NSNSIANMVTWTISKYGADSSATYPELFAAATVYSGVSAGCFYSNTNQVDGWNSTCAQGDVITTPEHWASIAEAMYSGYSGSRPRMQIYHGSINYYETCKQWAGVFGYDYSAPEKTEANTPQTNYETTIWGDSLTGVGHTVPIHGDKDMEWFGFA------------------------------------- | |||||||||||||
8 | 5cxuA | 0.15 | 0.10 | 3.22 | 0.45 | HHsearch | TAITYYKVTETERKNVILPVGYD---ENKKYPVVYYLHGLMSYED----------SMLEDSTLAIPTNLLKEGRAKEMIIVLPDVYAPKP----GTAV-----T-PDFNPEKGYDNFINELIEVIMPYMEEHY---------------------------------------------------------SILTGRENTALCGFSMGARTSLYIGYMRSD----------------LIGYVGAFAPAPGITPEGLISE-DEFRA-EIQPISLIDCGT----NDSVVG---QFPKSYHEILTRNN- | |||||||||||||
9 | 5ao9A | 0.11 | 0.09 | 3.05 | 0.84 | SP3 | EVKVYKKVDNVDLKLYIYKP--ADWKPADRRSAIVFFFG-----------GGWQSGSPA-QFRPQCEYFAGR--GMVAMAAD-------------------YRVGSRHNVKVDCVADAKSAIRWVRQHAAELGVDGHLAACTVMVPDLEAPEEDHTISSQANAAILFNPVLILSREGLKPRQDWEERLRERLGTEPKAVS----------------PYHHIRAGLPADNTVP--FETI--------------------RLFAEAMKKAGNRCELVP----FEGGDNLAYQKTLELADEFLVEIGF | |||||||||||||
10 | 1qlwa | 0.07 | 0.07 | 2.67 | 1.00 | PROSPECTOR2 | VPKTPAGPLTLSGRDVTSETLSLSPKYDAHGTVITLIHGCCLTGMTWETTPDGRMGW--------DEYFLRK--GYSTYVI-------------------DQSGRGRSATDISAINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKLD-GTVLLSHSQSGIYPFQTAAMNPKGSVEPGECPKPEDVKPLTSIVLVVFGDHIEEFPRWAPRHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDADLILDWIGRNTA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |