>PF10334 (241 residues) PRPKSSKLIVRKILASSLFEIGNIHCDISKFALQRLDNPDFRIQERHDVLVARFRYLLMH VAGLAKLLMPLKFEIPIAGYWPESKYMRLQMLIMDTVQLYFMLLVALNSLQDPKMWIPII IKRVGMCYSELDAEIFATIHMASDALKTKDPLPKITEATIAIRHMELLRQQWGINKISLS ERFYSEKSENDQASLLDNLDYKKFFSRDGQLNILSLLIAHMIYNRLDEIMMVVKGLVGEV Y |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | PRPKSSKLIVRKILASSLFEIGNIHCDISKFALQRLDNPDFRIQERHDVLVARFRYLLMHVAGLAKLLMPLKFEIPIAGYWPESKYMRLQMLIMDTVQLYFMLLVALNSLQDPKMWIPIIIKRVGMCYSELDAEIFATIHMASDALKTKDPLPKITEATIAIRHMELLRQQWGINKISLSERFYSEKSENDQASLLDNLDYKKFFSRDGQLNILSLLIAHMIYNRLDEIMMVVKGLVGEVY | |||||||||||||||||||
1 | 3l39A | 0.08 | 0.07 | 2.64 | 0.88 | SPARKS-K | ----SKFTPKEPKFFPLLKQLSDVLSASSVLLVESMEHDLPERADYYKQIKDMEREGDRLTHLIFDELSTT-----FITPFDREDIHDLASCMDDVIDGINSSAKRIVIYNPRP---------ISESGKELSRLIHEEAINIGKAMDEETFRKNP---KPLRDYCTQLHDIENDDVYELFITKLFEEEKDC---------------IELIKIKEIMHELEKTTDAAEHVGKILKNLIVKYS | |||||||||||||
2 | 1sumB | 0.12 | 0.10 | 3.41 | 1.19 | FFAS-3D | ----EKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLL-----TVTAGIRVAELIENIADKCHDIAKNVLELMEEPPLKEDIPA--------MANQTSEMLKFALRMFADVN---VEKSFEVCRMDSKVDDLYEKVREELLL---------------------YMMESPKYVKRALLLLEIAGNIEIIDYATNIVEVSVGEAY | |||||||||||||
3 | 3ay5A1 | 0.08 | 0.04 | 1.62 | 0.25 | HHpred | --------SPLEQLRHLAEELRLLLPRV----RVGEATE----EFNREMFWRRLNEAAVTVSREATTLTIVFS----QLPLP--SPQETQKFCEQVHAAIKAFIAVYYLLPKGITLRKLVRGA----TLDIVDGMAQLM----EVLSVNS------------------------------------------------------------------------------------------- | |||||||||||||
4 | 3i9yA | 0.12 | 0.11 | 3.93 | 0.84 | MUSTER | -----SAMIEARQVSELSTRIISSVQMLSNA------QNEQERKEAGRVLFEQLESLLTHIKELGGESF------------DSKLLDALESNVQNVINNLAELGVTVERKLWLAKEIDTRVEEMRLLLTERLHELHLLAFKMLNQIEEARTLTNVDRIQQIQTAFENNLKIMKRRVLAVEDPTRSKQMSQLLTELGKRQVVFTILLQQYENNEQSQQLMQKTLELFSELNSTVNKLVDDS- | |||||||||||||
5 | 1t72A | 0.06 | 0.05 | 2.17 | 0.87 | CNFpred | --LFKELEETKEQVIKMAKLVQEAIDKATEALNKQ-------NVELAEEVIKGDDTIDLLEVDIERRCIRMIALY-----QPEAGDLRMIMGIYKIVSDLERMGDEAENIA---ERAILLAEE-YVNINFMSEIVKEMVNDSVISFIQQ-------DTLLAKKVIEKDDTVDELYHQLERELMTYVLEDPRN-------------IKRAMHLSFVARHYERIADHAENVAEAAIYLSE--- | |||||||||||||
6 | 1vt4I3 | 0.06 | 0.04 | 1.61 | 0.71 | HHsearch-2 | ------------------------------------EY-----------------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFL---DFRFLEQKRHDSTAWILNTLQQLKFYKPYIC-----------DNPKYERLVN---AILD--FL------------------PKI--EENLICSKYTDLLR----IALMAEDEAIFEEAHKQVQRGGG | |||||||||||||
7 | 3i9yA | 0.12 | 0.11 | 3.93 | 0.98 | Neff-PPAS | -----SAMIEARQVSELSTRIISSVQMLSNA------QNEQERKEAGRVLFEQLESLLTHIKELGGES------------FDSKLLDALESNVQNVINNLAELGVTVERKLWLAKEIDTRVEEMRLLLTERLHELHLLAFKMLNQIEEARTLTNVDRIQQIQTAFENNLKIMKRRVLAVEDPTRSKQMSQLLTELGKRQVVFTILLQQYENNEQSQQLMQKTLELFSELNSTVNKLVDDS- | |||||||||||||
8 | 1vt4I3 | 0.10 | 0.05 | 1.69 | 0.89 | HHsearch | -----------------------------------------------------------------------------------------------------------------------------EY---ALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIHHLKNIEHPERMTLFRLDQKIRHDAWNASGSILNTYKPYICDNDPKYERLVNAILDFLPKIEEYTDLLRIAMAED- | |||||||||||||
9 | 1z72A | 0.06 | 0.05 | 2.12 | 0.82 | SP3 | ------------------------------------QDYAFQPGLTVGELLKSSQKDWQAAINHRFVKELFA------GTIENKVLKDYLIQDYHFFDAFLSLGACVAHADKLELRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVT------LHPVTKAFQDLYSAVASSDYAHLDWGSKDLALPEVYIHSE---WINLHRGPFFAEWVQFLVDELNRVGKLTELQQRWNQAV--AL | |||||||||||||
10 | 3i9wA | 0.08 | 0.07 | 2.84 | 0.89 | PROSPECTOR2 | PTNEKMWQAQGRMLTAQSLKINALLQALR-----EQGFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQ-----------QQLSQQIVAAADEIARLAQGQANNATTQDQRQAAESALDRLIDIDLEYVMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVLRNQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |