Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | PRPKSSKLIVRKILASSLFEIGNIHCDISKFALQRLDNPDFRIQERHDVLVARFRYLLMHVAGLAKLLMPLKFEIPIAGYWPESKYMRLQMLIMDTVQLYFMLLVALNSLQDPKMWIPIIIKRVGMCYSELDAEIFATIHMASDALKTKDPLPKITEATIAIRHMELLRQQWGINKISLSERFYSEKSENDQASLLDNLDYKKFFSRDGQLNILSLLIAHMIYNRLDEIMMVVKGLVGEVY |
1 | 3l39A | 0.08 | 0.07 | 2.64 | 0.88 | SPARKS-K | | ----SKFTPKEPKFFPLLKQLSDVLSASSVLLVESMEHDLPERADYYKQIKDMEREGDRLTHLIFDELSTT-----FITPFDREDIHDLASCMDDVIDGINSSAKRIVIYNPRP---------ISESGKELSRLIHEEAINIGKAMDEETFRKNP---KPLRDYCTQLHDIENDDVYELFITKLFEEEKDC---------------IELIKIKEIMHELEKTTDAAEHVGKILKNLIVKYS |
2 | 1sumB | 0.12 | 0.10 | 3.41 | 1.19 | FFAS-3D | | ----EKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLL-----TVTAGIRVAELIENIADKCHDIAKNVLELMEEPPLKEDIPA--------MANQTSEMLKFALRMFADVN---VEKSFEVCRMDSKVDDLYEKVREELLL---------------------YMMESPKYVKRALLLLEIAGNIEIIDYATNIVEVSVGEAY |
3 | 3ay5A1 | 0.08 | 0.04 | 1.62 | 0.25 | HHpred | | --------SPLEQLRHLAEELRLLLPRV----RVGEATE----EFNREMFWRRLNEAAVTVSREATTLTIVFS----QLPLP--SPQETQKFCEQVHAAIKAFIAVYYLLPKGITLRKLVRGA----TLDIVDGMAQLM----EVLSVNS------------------------------------------------------------------------------------------- |
4 | 3i9yA | 0.12 | 0.11 | 3.93 | 0.84 | MUSTER | | -----SAMIEARQVSELSTRIISSVQMLSNA------QNEQERKEAGRVLFEQLESLLTHIKELGGESF------------DSKLLDALESNVQNVINNLAELGVTVERKLWLAKEIDTRVEEMRLLLTERLHELHLLAFKMLNQIEEARTLTNVDRIQQIQTAFENNLKIMKRRVLAVEDPTRSKQMSQLLTELGKRQVVFTILLQQYENNEQSQQLMQKTLELFSELNSTVNKLVDDS- |
5 | 1t72A | 0.06 | 0.05 | 2.17 | 0.87 | CNFpred | | --LFKELEETKEQVIKMAKLVQEAIDKATEALNKQ-------NVELAEEVIKGDDTIDLLEVDIERRCIRMIALY-----QPEAGDLRMIMGIYKIVSDLERMGDEAENIA---ERAILLAEE-YVNINFMSEIVKEMVNDSVISFIQQ-------DTLLAKKVIEKDDTVDELYHQLERELMTYVLEDPRN-------------IKRAMHLSFVARHYERIADHAENVAEAAIYLSE--- |
6 | 1vt4I3 | 0.06 | 0.04 | 1.61 | 0.71 | HHsearch-2 | | ------------------------------------EY-----------------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI-EHPERMTLFRMVFL---DFRFLEQKRHDSTAWILNTLQQLKFYKPYIC-----------DNPKYERLVN---AILD--FL------------------PKI--EENLICSKYTDLLR----IALMAEDEAIFEEAHKQVQRGGG |
7 | 3i9yA | 0.12 | 0.11 | 3.93 | 0.98 | Neff-PPAS | | -----SAMIEARQVSELSTRIISSVQMLSNA------QNEQERKEAGRVLFEQLESLLTHIKELGGES------------FDSKLLDALESNVQNVINNLAELGVTVERKLWLAKEIDTRVEEMRLLLTERLHELHLLAFKMLNQIEEARTLTNVDRIQQIQTAFENNLKIMKRRVLAVEDPTRSKQMSQLLTELGKRQVVFTILLQQYENNEQSQQLMQKTLELFSELNSTVNKLVDDS- |
8 | 1vt4I3 | 0.10 | 0.05 | 1.69 | 0.89 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------EY---ALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHIHHLKNIEHPERMTLFRLDQKIRHDAWNASGSILNTYKPYICDNDPKYERLVNAILDFLPKIEEYTDLLRIAMAED- |
9 | 1z72A | 0.06 | 0.05 | 2.12 | 0.82 | SP3 | | ------------------------------------QDYAFQPGLTVGELLKSSQKDWQAAINHRFVKELFA------GTIENKVLKDYLIQDYHFFDAFLSLGACVAHADKLELRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVT------LHPVTKAFQDLYSAVASSDYAHLDWGSKDLALPEVYIHSE---WINLHRGPFFAEWVQFLVDELNRVGKLTELQQRWNQAV--AL |
10 | 3i9wA | 0.08 | 0.07 | 2.84 | 0.89 | PROSPECTOR2 | | PTNEKMWQAQGRMLTAQSLKINALLQALR-----EQGFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQ-----------QQLSQQIVAAADEIARLAQGQANNATTQDQRQAAESALDRLIDIDLEYVMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVLRNQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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