>PF10268 (517 residues) ALLGAQLVITLIMVSVIQKLSPHFSLAKWILCSTGLTRYLHPTDDELRKLSGVPREKGKG KKDKRNGHQANGERSSTFHIPRSLDIRLDTLPISPYDIVHLRFYTEYQWLVDFSLYSAIV YTVSEVYHFFYPLKEEVNLSMLWCLLVVFFAFKLLASLTVQYFKSEESIGERSTCIVTGL AYLLIAMIILIVPEHTLEVGLDKAYHSFNTSASSFLEGQGLNSSGPASKIVVKFFIAVSC GILGALFTFPGLRMARMHWDSLRFCQDRLWLKLLLNVSFAMPFLLVVLWIKPLARDYLTG RVFSGMSSPILSVEAFETMRLGAVVFAVVLRFLLMPVYLQAYLNLAYDRVEEQKKEAGRI TNVELQKKISSIFYYLCVVTLQYVAPILMCLFFALMYKTLGEYTWSGVLKESLPLDECSA DLEYERAMLATVASEPGAAVDALDFQDITPEGEGEQQVPVEDNILTTAQSFQLSLQSLKS VFTKDVYRGLFGFATWWSCFIWFAASSLGMVYQSYFT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | ALLGAQLVITLIMVSVIQKLSPHFSLAKWILCSTGLTRYLHPTDDELRKLSGVPREKGKGKKDKRNGHQANGERSSTFHIPRSLDIRLDTLPISPYDIVHLRFYTEYQWLVDFSLYSAIVYTVSEVYHFFYPLKEEVNLSMLWCLLVVFFAFKLLASLTVQYFKSEESIGERSTCIVTGLAYLLIAMIILIVPEHTLEVGLDKAYHSFNTSASSFLEGQGLNSSGPASKIVVKFFIAVSCGILGALFTFPGLRMARMHWDSLRFCQDRLWLKLLLNVSFAMPFLLVVLWIKPLARDYLTGRVFSGMSSPILSVEAFETMRLGAVVFAVVLRFLLMPVYLQAYLNLAYDRVEEQKKEAGRITNVELQKKISSIFYYLCVVTLQYVAPILMCLFFALMYKTLGEYTWSGVLKESLPLDECSADLEYERAMLATVASEPGAAVDALDFQDITPEGEGEQQVPVEDNILTTAQSFQLSLQSLKSVFTKDVYRGLFGFATWWSCFIWFAASSLGMVYQSYFT | |||||||||||||||||||
1 | 6cc4A | 0.08 | 0.06 | 2.48 | 1.07 | SPARKS-K | FSRVLGFARDAIVARIFGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGE-----------------------------------DATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPADKFALTSQLLKITFYILLISLASLVGAILNTWNRFIPAFAPTLLNISMIGFALFAAPYFNPPVLWAVTVGGVLQLVYQLPHLKKIGMLVLPRINPAILGVSVSQISLIINTIFASSWMYYADRLMEFPSGVLGVALGTIGLRLCFLLALPSAVALGIPLTVSLFQYGKFT--------AFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSTQLMNLAFIGPLK----------------HAGLSLSIGLAACLNASLLYWQLRKQKIF---------TPQPGWMAFLLRLVVAVLVMSGVLLGMLHIM-------------PEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFA-------------------- | |||||||||||||
2 | 5c6gA | 0.09 | 0.08 | 3.15 | 1.47 | FFAS-3D | --HQKNLVYRLSQQYLAAQLQQYYTLVRQCV-------------HGLRYVK----------------------DGFQLTVEEDIQVTLQLARVSLRTRLRTTPLTDARHAVEFQLLYDVPQVVRHTTGLLEELADSDAWAWLFRYCRIIGLEAVLQEYLKLLQLVSAGPVGLHAFVLCSCVAFMWSLLLDLLVAIQLDENIMDLLTDF----KDFFSTHKDADGDDFNYHDCKNILLLFQSVSFSTKFLP--KVLKTSQELKETLQKRTSLVHVQSIRNIYDKVVDLCRFYQTWESLILSERVEGGIPRLQYSEYNILLEAISSHVGRLYSTLTKSKDPELRLIGIAHLYTLIVAELSSCSISELTQKTTDAWEQLQHAYLSLVQNNVWKCSVAILWAI---SRFEPFSGHPIHSSSNDQQTLYMQQLNEFFTDNALFKLKKSLL--LHFLLNYLGGTMLVSDVQKRCDISSSCFQMGKQQYMPGM-RYVAGIWHLMNSTVAITRAKLEGLVDKMLN | |||||||||||||
3 | 5xtcr | 0.09 | 0.07 | 2.57 | 1.44 | CNFpred | ---MLKLIVPTIMLLPLTWLSKKHMIWINTTTHSLI------ISIIPLLFF-------------------------------------NQINNNLFSCSLTFSSDPLTTPLLMLTTWLLPLTIMASQRHLSSE--PLSRKKLYLSMLIFLQISLIMTFTATE--------LIMFYIFFETTLIPTLAIITRWGN-YFLFYTLVGSLPLLIALIYTHNTLGSL-ELSNSWANNLMWLAYTMAFMVKMPLYGLLWLPKAHVEAP------IAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHM-----------AYPFLVLSLWGMIMTSSICLR-DLKSLIAYSSISHMALVVT---------AILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSRIMI----------------------------------------LSQGLQT---------LLPLMAFWWLLASLANLAL-TINLLGELSVLVTTTLLLTGLNMLVTALYSLYMFT | |||||||||||||
4 | 6cc4A | 0.07 | 0.06 | 2.63 | 1.11 | Neff-PPAS | NAAQVKDALTKMRAAALDAQK----------ATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTA-------------PGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIPAFFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDAGAFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFASG---NHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYG---------KFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSR------------QDIKTPVKIAIVTLILTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKI | |||||||||||||
5 | 1vt4I3 | 0.10 | 0.05 | 1.91 | 1.19 | HHsearch | -------------------------------------EYAL----------------HRS-------------IVDHYNIPKTFD---------SDDLIPPYLDQYFYHPERMTLF-RMVFLDFRFLQKIRHDSTAWNASG-----SIL---NTL-QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAEEAIFEEAHKQVQRGGGGGGGGGGGGGGGGGG--G-GG--G--------------------GGGGGGGG------------------------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGG-G-GGGGGG----GG--------GGGGGGGGGGGGGGGGGGGGGGG-----------------------GGGG-GGG-GG-GGG-GGG---G--------GGG-GGGGGG----GGGGGGGGGGG-G----------------------------------------------------------- | |||||||||||||
6 | 3wajA1 | 0.11 | 0.09 | 3.18 | 1.33 | PROSPECTOR2 | SVLVIAALISVK-------LRILNPWNSVF---TWTVRLGGNDPRLIENTI-------------------HNFPHRIWFDPFTYYPYGSY----------THFGPFLVYLGSIAGI-------------IFSATSGESLRAVLAFIPAIGGILPVYLLTREVFD-------KRAAVIAAFLIAIVPGQFLQRSILGFNDHHIWEAFWQVSALGTFLLAKGHDLTARQMAYPVIAGITIGLYVLAGFIIAPII--LAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPF---AFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFGRKGMPLAVIVLTALIMGLFFVLTNARFLKRRSFPEMALLIWAIAMFAAVSAVYSALALSVVFDKLHFRVAFDAQSSYAGGPNKQWYDALTWMRENTPDGEKYDEYYLQLYPTPQSNKEPFSYPFET--------------------------YGVISWWDYGHWIEAVAHRMPIANPFA | |||||||||||||
7 | 5t77A | 0.08 | 0.06 | 2.38 | 1.06 | SPARKS-K | RILGLFRDVLFAKYDAYFIAIMFPFFLRKVFGEGAM-------SSAFVPLYSEKSG-----------------------------------------EEKDKFLSSVINGFSLIILALVILSYFINLFGAGSSHETKILAKKLLLITSPIYFIFLWAISYSILNTNNKFF------WPALTPSISNITIIIGTFLSTKYGIISPTIGFLIGSILMFFSIKHKYYFTIKPTFMTMVVSQINTVVDMNVVSGSISYLQYASRFYLLPYGLFLNDALKTTLFFTIPSMVGLIFTPIIRFFYEHGAFTS--------KDTLITSKILIAYTLGL-PFYGIYSTISRSYHAI----------KN---TKTPFIAATIVSLSNIILDIIFGLKYGPIGVALATSIAGIIGVLYLLFSKTFPIKDFLKISLNSLIMLFVIYLTD------------FTDNEF--------------WFLIQILIGILVYLIFSSIFYRDLIRRFL------------------- | |||||||||||||
8 | 3ayfA2 | 0.08 | 0.07 | 2.78 | 1.38 | FFAS-3D | -----SFLKSILIFTIL--------ISSTVLLVGGYWIFMTMSFSAVWWSGASVTILILFIGIILYVYRYQLSMQEAYAEGKFPVIDLRRQPLTPSQVK------AGKYFVVVSALFFVQTMFGALLAHYYTEPDPFNIAKGYHLQLAIFWIATGIFIAPLVGGQEPKKQGLLVDLLFWALVVLVGGSMIG---------QWLGVNGYLGNEWFLLGHQGWEYIELGRIWQIILVVGMLLWLFIVFRGVKRGLLIHLLFYSA-------IAVPFFYIFAFFTMADFWRWAVVVIGFLLV-------QLRLVTKKSTVRALYFQFTILLGSGVIGIGHHYYYNVWIALGAVFSA------LEVIPLTLLILEAYEQYKMMRFPYKATFWFLISTAIWNLVGAGVFGFLINLPAVSYFEHGQFLTPAHGHAAMM-------------------------------GVYGMFAIAVLLYSLRNIVKPEAWNDKWLKFSCWMLNIGLAGMVVGILQMKE-- | |||||||||||||
9 | 5y50A | 0.09 | 0.06 | 2.46 | 1.44 | CNFpred | FLSSTAIAVSFCSVTGFSVVFGLASALETLCGQA----NGAKQYEKLGVHT-----------------------------YTGIVSLFLVCIPLSLLWTYIGDAQEAGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFKF-----GLGSLGAAIAIGVSYWLNVTVLGLYSSSCSKSRAT--SMSLFEGMGEFFR---------FGIPSASMICLEWWSFEFLVLLSGILPNPKLEASVL------SVCLSTQSSLYQIPESLGAAASTRVANELGAG--------------NPKQARMAVYTAMVITGVESI-MVGAIVFGARNVFGYLFS------SETEVVDYVKSMAPLLSLSVIFDALHAALSGVARGSGRQ-------------------------------------------------------------DIGAYVNLAAYYLFGIPTAILLAFGFKMRGRGLWIGITVGSCVQAVLLGLIVILTNW | |||||||||||||
10 | 3wajA1 | 0.10 | 0.08 | 3.06 | 1.09 | Neff-PPAS | -VIAALISVKLRILNPWNSVFTWTRLIENTIHNFPHRIWFDP-----------------------------------------------------------FTYYPYGSYTHFGPFLVYLGSIAGIIFSATSGESLRAVLAFIPAIGGVLAILPVYLLTREVF------DKRAAVIAAFLIAIVPGQFLQRSILGFNDWEAFWQVSALGTFLLAYNRWKGHDLTARQMAYPVIAGITIGLYVLSGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAF---NYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGGMPLAVIVLTALIMGLKRRSFPEMALLIWAIAMFIALRFAYYFAAVSAVYSALALSVVFPTYILADAQSSYAGGPNKQWYDALTWMRENTPDGEKYDEYYLQLYPTPQSNKEPFSYPFETY--------------------------GVISWWDYGHWIEAVAHRMPIANPFQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |