Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | QKYQNKTAFKNDLHDTSHRTKIINSLDITGVCKRCKDIIEWKIKYKKYKPLTAPRKCVNCEQKTIKHAYHMLCSKCATEKQVCAKCCK |
1 | 3hgfC | 0.15 | 0.14 | 4.61 | 1.08 | MUSTER | | KKIENIVT-KKYIYKKLLNEIAEIEKDKTSL-EEVKNINMSYGKSLNKLFLEKIKK----KSENMIKSMEKYIKDLDEIKEQSPKAEM |
2 | 1z1nX2 | 0.22 | 0.22 | 6.82 | 1.14 | Neff-PPAS | | -NYMKGDEWQAAEFPHRKIYQKLVEEAAKSPMANHFHGDALTMCSGNAKPSLNPPKCASCNQPGLKGAFHNQCIGCHQEMQVCQGCHK |
3 | 5cwdA1 | 0.15 | 0.11 | 3.84 | 0.78 | SPARKS-K | | -------TKEDARSTCEKAARKAAESDEEVAKQAAKDCLEVAKQAG-------------MPTKEAARSFCEAAARAAAESNIAAKCLE |
4 | 1z1nX2 | 0.28 | 0.25 | 7.64 | 0.46 | FFAS-3D | | -NYMKGDEWQAAEFPHRKIYQKLVEEDALTMCSGC---------HHNAKPSLNPPKCASCNQPGLKGAFHNQCIGCHQEMQVCQGCHK |
5 | 1gwsA | 0.23 | 0.19 | 6.07 | 0.37 | HHpred | | ----IAKEYQPSEFPHRKIVKTLIAGIKGTLCQGCHHNSPA-------S--LTPPKCASCHGKPLKAAYHQQCMGCHDRMKICVDCHK |
6 | 3carA | 0.20 | 0.18 | 5.84 | 1.00 | MUSTER | | ---EDMTHVPTDAFGKLERHDEHNEKAGIESCNACHHVWV---GVLAEDEDSVGTPCSDCDTPGLQDAYHQQCWGCHEKQAMCGECVK |
7 | 1nklA | 0.20 | 0.11 | 3.64 | 0.63 | CNFpred | | ----------------------------GYFCESCRKIIQKLEDMV----------GPQPNEDTVTQAASQVCDKLKILRGLCKKIMR |
8 | 1vt4I3 | 0.11 | 0.11 | 4.07 | 0.58 | HHsearch-2 | | PKTFDSDDLIPPYLDQYFIIEHPERMTLFRMVFLDFRFLEQKIRHDSGSILNKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK |
9 | 3hgfC | 0.07 | 0.07 | 2.77 | 1.09 | Neff-PPAS | | KKIENIVTKIDKKKYIYKKLLNEIAEIEKDKTSLEEVKNINMSYGKSLNKLFLEKI------KKKSENMIKSMEKYIKDLDEIKEQSP |
10 | 2f9iB1 | 0.23 | 0.08 | 2.50 | 0.30 | HHsearch | | -------------------------------------------------PAGIMTKCPKCKKIMYTKELA-------ENLNVCFNCD- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|